G1380647


Basic Information

Item Value
gene id G1380647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46141214 ~ 46142075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577100
cctacatacagtatatggttGTTTGTCACCTGCCAATGTTTTCCCTTATGCAAGAGCAGGATGGCGTTCTGTTTCACAAGACCCATAATACTTGCTCTGCAGTGACCACAGGTCCCTGCTACTGCACGTCAGTGCTGCCTCTTTGCAGTCGTTCACAGTAAAATAGGAGAAGTAAAGAAGCTGTTGAAATCTGGGTTCACTCCAAGCCAGATCATCCTCCTGCCTCTTACGGTATCTCAGCATTTCTGAATTCCCGTAGCAAGCCCATGTTCCGGATATCCGGGGAGCACATCTCTCACATTACTGCCATTTTTATCtaggttaaagggatagttcacccaaattacaaaatgacacattggtttccttaccctgttagcagtctatggacaaggtatgacagcatccatgctttggtttagtttccctggcactgtttccacatgctaacattttagcatttgtggcatgAAATCaaattcaagtcatgggaccgatattagcatttttcacgcatcatgtccaaatcatctaaAAGTATCTCAAATTGATTGTGAAACTCAACAAATTCACTTATGGAGGTTTTAAACATGATGTGAGTAAGAAATGCTAATATTGGTCCCATGACTTTAATGTGATTTGTGTcacaaatgctaaaacattaGCATGTGGAAAtagtgccagggaaactaaaccaaagcatgaactgctgtcataccttgtccataacctgcttacagggtaagggaACCAATATGCCATTTTGTAATTTAGGTGAACTATCCATTTATTGGCATGTGTAAAATCGAAATCAGTTATTTGGTCTGTAGTAGTGAACTGTTCGTTAACATAAAATATAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577100 True 862 lncRNA 0.40 1 46141214 46142075

Neighbor

gene id symbol gene type direction distance location
peds1 tm189 coding downstream 6468 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 18333 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 29999 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 80332 46051699 ~ 46060882 (-)
srxn1 srxn1 coding downstream 101180 46037962 ~ 46040034 (-)
LOC110492134 LOC106567201 coding upstream 9522 46151597 ~ 46165561 (-)
LOC110492740 LOC106567210 coding upstream 138253 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 145162 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 175769 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 188779 46330854 ~ 46337487 (-)
G1380646 NA non-coding downstream 1088 46139783 ~ 46140126 (-)
G1380584 LOC100136165 non-coding downstream 2589 46137031 ~ 46138625 (-)
G1380645 NA non-coding downstream 4381 46136600 ~ 46136833 (-)
G1380585 NA non-coding downstream 13572 46127394 ~ 46127642 (-)
G1380637 NA non-coding downstream 43074 46097669 ~ 46098140 (-)
G1380671 klhl12 non-coding upstream 35213 46177288 ~ 46177878 (-)
G1380711 NA non-coding upstream 100808 46242883 ~ 46243173 (-)
G1380682 NA non-coding upstream 106660 46248735 ~ 46253139 (-)
G1380719 LOC106567209 non-coding upstream 132011 46274086 ~ 46274934 (-)
G1380720 NA non-coding upstream 134633 46276708 ~ 46277038 (-)
G1380431 NA other downstream 435761 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 513516 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 820836 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1176732 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1587667 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 274485 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 456622 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 515392 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 617212 46724969 ~ 46761466 (-)
G1381036 NA other upstream 736536 46878611 ~ 46879146 (-)

Expression


Co-expression Network