G1380671 (klhl12)


Basic Information

Item Value
gene id G1380671
gene name klhl12
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46177288 ~ 46177878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577128
AAAGGCTACCTAATTTACAAAGGCTACCTAATGGCTAACTAATGGCTACCTAATTTACAAAGGCTACCTAATTTACAAAGGCTACAATGTaaaacaacaatattacaatCCAATTAGAGCGTTAAAACACAGGTATAATACCTCATCAAATCCACCTTTGTTTACCTGGATTTCATCGCAtttaactagtttttcaacctcGTTCTGGCAGAGCAGCATAAACTCCTCATGTTGAACAACCTCAGGGAAGTGCTTCTGAGAGAAGAGCTCAGCGGCCTGCATCAGGTCAAGGCAATTGTGGGTCTCAGCAAAGTCCCGAATGCCCAGGCAGTTTGTGGGATCAAGCTGACTATCCAGAAAGTCACAACAT

Function

symbol description
klhl12 Acts upstream of or within Wnt signaling pathway; anterior/posterior pattern specification; and convergent extension involved in axis elongation. Predicted to be located in cytoplasmic vesicle. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human KLHL12 (kelch like family member 12).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577128 True 370 lncRNA 0.42 2 46177288 46177878

Neighbor

gene id symbol gene type direction distance location
LOC110492134 LOC106567201 coding downstream 11727 46151597 ~ 46165561 (-)
peds1 tm189 coding downstream 42542 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 54407 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 66073 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 116406 46051699 ~ 46060882 (-)
LOC110492740 LOC106567210 coding upstream 102450 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 109359 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 139966 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 152976 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 163202 46341080 ~ 46371222 (-)
G1380647 NA non-coding downstream 35213 46141214 ~ 46142075 (-)
G1380646 NA non-coding downstream 37162 46139783 ~ 46140126 (-)
G1380584 LOC100136165 non-coding downstream 38663 46137031 ~ 46138625 (-)
G1380645 NA non-coding downstream 40455 46136600 ~ 46136833 (-)
G1380585 NA non-coding downstream 49646 46127394 ~ 46127642 (-)
G1380711 NA non-coding upstream 65005 46242883 ~ 46243173 (-)
G1380682 NA non-coding upstream 70857 46248735 ~ 46253139 (-)
G1380719 LOC106567209 non-coding upstream 96208 46274086 ~ 46274934 (-)
G1380720 NA non-coding upstream 98830 46276708 ~ 46277038 (-)
G1380721 LOC100701228 non-coding upstream 99347 46277225 ~ 46277487 (-)
G1380431 NA other downstream 471835 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 549590 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 856910 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1212806 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1623741 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 238682 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 420819 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 479589 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 581409 46724969 ~ 46761466 (-)
G1381036 NA other upstream 700733 46878611 ~ 46879146 (-)

Expression


Co-expression Network