G1380719 (LOC106567209)


Basic Information

Item Value
gene id G1380719
gene name LOC106567209
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46274086 ~ 46274934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577177
TAGTCataaaatgtctttattgttttagtTTATAATGGTGCTACTGTACAAAATAAGTGCATTCTGGACTGTCAGTGTGTCTTGTGATGTATTGTCTAGTCACAAAGTCATGTGTTGCATGTATAATTTCATATGAACGCTTACCATATAGGATGCAAATATAAGAACTCTCTTGTGTCTCCCGCAAGGCCACTGAGGGTCACTGAGTAGGTAGGGATCATAGTCTGCCAGGTCTTCTATACCTGTAAAAATGGGGATTAAATCaaatgagaacacacacacacagtaatgatTGCAAAAACAATttgccagaggagagagagagagagtgcatgtaAGCCTCTATTCTAGTGAAGTGGAGCGTACTCGGGTCCTGTCCTATGGTGCTGTTGAGTCGAGACGGGTTGGTGTAGTTCTTCTGGCCGTTGCCTCGGTAACGGGATAGGGGTGTCTGTGTTGTGCTGGGCTCTAGTGGTCCACTGCTCTTCGACCTCACCAGGGCATTAGTTGGGAAAAGGAATCGGGCGTACGATACCGTCTGAAGAGGAAATACACATGTTAACTAACACAAAGCACAGACAGATAGTACGTAATCGCCCTCTCCAGTTCAACCTTACCTTTCCATATGCCCCTAGCTCCACCTCAAGGCCCTCCAGGCCAGGGAACAGGTCAGAGCCACGCCCAGAGGACAGCCGTTGTCTCTGAGCATCCAGCTTTGGGTCACTGGGTGGGCAGGAAGAGAAACTACTCATGTCACCATCATGCAGCTCCACATTAAAGCCTGAGATCATTATAACAACTCCTTTCCTGAGGGCGATACATGACACCTGTAGTTGGTTGGGGTTGTGT

Function

NR:

description
CDK5 and ABL1 enzyme substrate 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577177 True 849 lncRNA 0.47 1 46274086 46274934

Neighbor

gene id symbol gene type direction distance location
LOC110492134 LOC106567201 coding downstream 108525 46151597 ~ 46165561 (-)
peds1 tm189 coding downstream 139340 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 151205 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 162871 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 213204 46051699 ~ 46060882 (-)
LOC110492740 LOC106567210 coding upstream 5394 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 12303 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 42910 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 55920 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 66146 46341080 ~ 46371222 (-)
G1380682 NA non-coding downstream 20947 46248735 ~ 46253139 (-)
G1380711 NA non-coding downstream 30913 46242883 ~ 46243173 (-)
G1380671 klhl12 non-coding downstream 96208 46177288 ~ 46177878 (-)
G1380647 NA non-coding downstream 132011 46141214 ~ 46142075 (-)
G1380646 NA non-coding downstream 133960 46139783 ~ 46140126 (-)
G1380720 NA non-coding upstream 1774 46276708 ~ 46277038 (-)
G1380721 LOC100701228 non-coding upstream 2291 46277225 ~ 46277487 (-)
G1380722 NA non-coding upstream 9611 46284545 ~ 46284782 (-)
G1380741 NA non-coding upstream 63912 46338846 ~ 46339083 (-)
G1380786 NA non-coding upstream 145233 46420167 ~ 46420441 (-)
G1380431 NA other downstream 568633 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 646388 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 953708 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1309604 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1720539 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 141626 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 323763 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 382533 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 484353 46724969 ~ 46761466 (-)
G1381036 NA other upstream 603677 46878611 ~ 46879146 (-)

Expression


Co-expression Network