Gene
RNA
| Item | Value |
|---|---|
| gene id | G1380721 |
| gene name | LOC100701228 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 46277225 ~ 46277487 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: CDK5 and ABL1 enzyme substrate 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1577179 | True | 263 | lncRNA | 0.52 | 1 | 46277225 | 46277487 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492134 | LOC106567201 | coding | downstream | 111664 | 46151597 ~ 46165561 (-) |
| peds1 | tm189 | coding | downstream | 142479 | 46129671 ~ 46134746 (-) |
| LOC110492133 | LOC105022328 | coding | downstream | 154344 | 46115201 ~ 46122881 (-) |
| slc52a3 | slc52a3 | coding | downstream | 166010 | 46103115 ~ 46111215 (-) |
| scrt2 | scrt2 | coding | downstream | 216343 | 46051699 ~ 46060882 (-) |
| LOC110492740 | LOC106567210 | coding | upstream | 2841 | 46280328 ~ 46284105 (-) |
| LOC110492742 | LOC106567211 | coding | upstream | 9750 | 46287237 ~ 46293439 (-) |
| LOC110492744 | LOC106567213 | coding | upstream | 40357 | 46317844 ~ 46330626 (-) |
| LOC110492745 | mare1 | coding | upstream | 53367 | 46330854 ~ 46337487 (-) |
| LOC110492746 | LOC106567215 | coding | upstream | 63593 | 46341080 ~ 46371222 (-) |
| G1380720 | NA | non-coding | downstream | 187 | 46276708 ~ 46277038 (-) |
| G1380719 | LOC106567209 | non-coding | downstream | 2291 | 46274086 ~ 46274934 (-) |
| G1380682 | NA | non-coding | downstream | 24086 | 46248735 ~ 46253139 (-) |
| G1380711 | NA | non-coding | downstream | 34052 | 46242883 ~ 46243173 (-) |
| G1380671 | klhl12 | non-coding | downstream | 99347 | 46177288 ~ 46177878 (-) |
| G1380722 | NA | non-coding | upstream | 7058 | 46284545 ~ 46284782 (-) |
| G1380741 | NA | non-coding | upstream | 61359 | 46338846 ~ 46339083 (-) |
| G1380786 | NA | non-coding | upstream | 142680 | 46420167 ~ 46420441 (-) |
| G1380768 | NA | non-coding | upstream | 162573 | 46440060 ~ 46517372 (-) |
| G1380817 | NA | non-coding | upstream | 209663 | 46487150 ~ 46548798 (-) |
| G1380431 | NA | other | downstream | 571772 | 45705110 ~ 45705453 (-) |
| LOC110492109 | LOC106567177 | other | downstream | 649527 | 45613938 ~ 45627786 (-) |
| slc48a1a | LOC106567162 | other | downstream | 956847 | 45315947 ~ 45320378 (-) |
| plxna2 | LOC106567158 | other | downstream | 1312743 | 44621739 ~ 44964691 (-) |
| G1378530 | NA | other | downstream | 1723678 | 44553014 ~ 44553547 (-) |
| LOC110492748 | ppdpf | other | upstream | 139073 | 46416560 ~ 46419996 (-) |
| LOC110492764 | fkb1a | other | upstream | 321210 | 46598697 ~ 46601691 (-) |
| LOC110492767 | LOC106572444 | other | upstream | 379980 | 46657459 ~ 46668762 (-) |
| LOC110491077 | LOC106567232 | other | upstream | 481800 | 46724969 ~ 46761466 (-) |
| G1381036 | NA | other | upstream | 601124 | 46878611 ~ 46879146 (-) |
