G1380817


Basic Information

Item Value
gene id G1380817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46487150 ~ 46548798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577285
tatcggtagtgacagtgtttcaaccctttacaatgaagatctgtgaagttatttggatttatttggaattatctttgaaagacagggtcctgaaaaagggcagtTTCTTTTTGTGCTGAGTTtatttatattagccctctgattacaatcaAGAGCAAaacgtgctgctctgttttgagccagctgcaggTTAACtatgtctttccttgcagcactggaccacacgactgaacaataatcaagattagacaaaactagagcctgcagaacttgctttttggagtctGGTGTCagaaaagcagagcatctctttattatggccagacctctccccatctttacaaccattgaatctatatgtttgaTGACATACAGTACTGTCACTCTGTAAAAATATGCATTTACACATACGGTTGAAAATGGACCAAACCCTATAATTGTGTGTCCTACATTAATGTTAATGGAAAGTTTGCATGAAAATTTGAGTCATGTGCAAATTATCAAAGTTATGTATACAGATTTATAGTTAGGATTTGGACCTATGTGAAGGTatgagtgtgcctgtgtgtgtgcgtgtgtgtgcagttCATACATTAAATTCCAGATAGCAGAGGAAAATAAAGACATTTTATTAACAATCTTCAATATTGTGATAGAAATTAGCTAAAGTCAGTGGTTGTCATGTAAAAAAGCATCTTGTAATTTTTTAGGCCTACCTCTGAATTTTGTTCAAATTTGCGTGCCACTGATGGAAAAAAGACCCTGGCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577285 True 769 lncRNA 0.37 2 46487150 46548798

Neighbor

gene id symbol gene type direction distance location
LOC110492754 LOC106567220 coding downstream 644 46478316 ~ 46486506 (-)
LOC110492749 LOC106567344 coding downstream 39116 46442923 ~ 46448034 (-)
LOC110492750 LOC106567218 coding downstream 47336 46423152 ~ 46439814 (-)
LOC110492748 ppdpf coding downstream 67154 46416560 ~ 46419996 (-)
LOC110492746 LOC106567215 coding downstream 115928 46341080 ~ 46371222 (-)
LOC110492764 fkb1a coding upstream 49899 46598697 ~ 46601691 (-)
LOC110492766 f110a coding upstream 57912 46606710 ~ 46610975 (-)
LOC110491075 LOC106567229 coding upstream 62411 46611209 ~ 46654906 (-)
LOC110492767 LOC106572444 coding upstream 108661 46657459 ~ 46668762 (-)
LOC110492768 LOC100380661 coding upstream 157426 46706224 ~ 46722600 (-)
G1380786 NA non-coding downstream 66709 46420167 ~ 46420441 (-)
G1380741 NA non-coding downstream 148067 46338846 ~ 46339083 (-)
G1380722 NA non-coding downstream 202368 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 209663 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 210112 46276708 ~ 46277038 (-)
G1380895 NA non-coding upstream 53317 46602115 ~ 46603005 (-)
G1380965 NA non-coding upstream 227395 46776193 ~ 46776427 (-)
G1380966 NA non-coding upstream 227916 46776714 ~ 46776950 (-)
G1381021 NA non-coding upstream 314699 46863497 ~ 46868956 (-)
G1381025 NA non-coding upstream 314927 46863725 ~ 46868712 (-)
G1380431 NA other downstream 781697 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 859452 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 1166772 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1522668 44621739 ~ 44964691 (-)
LOC110491077 LOC106567232 other upstream 210489 46724969 ~ 46761466 (-)
G1381036 NA other upstream 329813 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 538371 47081938 ~ 47089563 (-)

Expression


Co-expression Network