XLOC_032853 (GNG12)


Basic Information

Item Value
gene id XLOC_032853
gene name GNG12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 23955374 ~ 24053616 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063859
ATTTTACGCGTAACGTTATAGAAGTAAAGGGTCGGTTTCTGAGTTCgactgttttaaaataaaaaggtaaCGTTAGTTTTGCAGAACATTCAAGCCAAGAATAAAACAGTTCATGAGGTGACAGTTACAAGGAGAACTTTATTGTGAAGAATTGCCATCGACAGATCGGTTTATGTTGGCAGCAGCACGGGTGCTTTTCTTTTGCCGTTTGCTTCTCCCCACTAACTTACACCCACTGAACTGAGCTACGGTTTCTAAAGCATCTGCAGACCTCATGCATTACTGCAGTGAACATGCCAAGTATGATCCTCTACTCATGGGCATCCCAGCTTCAGAAAACCCTTTCAAAGATAAAAAGCCGTGCACTATATTGTGAGAGCTTTTACTCTTGATGTGTCTTTTTAATGTTgccttttattgttgttgttttttttttccaagcgtTCATCTTCAAACGTTCATTACAATCACTGTTTGCCTTAAAAAGACCTAAACCTCAAGCCATTTTTCAATTGTATCCACAAAAGTACTGACTAGAAATGTTCCTGCCATCTGAAAAGGAGAGCCAAAGCACGTAGTAAACAAAACCATTTGTTGTGCAGAGACAAAACCAGCCCATGAATGAATCCGTAGCTTTAGGGCAGAGCACAGATGAGTTGTTTGCTTTGTGATTGTGTCCACTGATGTGGTTGTGTCTTCTGCAAATAAAGGGTGAGGTCAGAGTGGGCGTTTTTACCACGAAGCACAGgaaatgatatttttttaatgactgCTCTCTGTAATGTATATCTGCAGATAAGCAGAGCCTCATCAGCAGAGCTTCGACTGT
>TCONS_00063860
TTCTCCCCACTAACTTACACCCACTGAACTGAGCTACGGTCTGTGAAGATAATCGAAAATGTTGTCCAAGATGCAAAGCTCTAATAATATAGCCCAGGCCAGAAGGAACGTTCAACAGCTACGGATAGAAGCTAATGTAGAAAGAATAAAGGTTTCTAAAGCATCTGCAGACCTCATGCATTACTGCAGTGAACATGCCAAGTATGATCCTCTACTCATGGGCATCCCAGCTTCAGAAAACCCTTTCAAAGATAAAAAGCCGTGCACTATATTGTGAGAGCTTTTACTCTTGATGTGTCTTTTTAATGTTgccttttattgttgttgttttttttttccaagcgtTCAT
>TCONS_00063861
ATGTTGTCCAAGATGCAAAGCTCTAATAATATAGCCCAGGCCAGAAGGAACGTTCAACAGCTACGGATAGAAGCTAATGTAGAAAGAATAAAGGTTTCTAAAGCATCTGCAGACCTCATGCATTACTGCAGTGAACATGCCAAGTATGATCCTCTACTCATGGGCATCCCAGCTTCAGAAAACCCTTTCAAAGATAAAAAGCCGTGCACTATATTGTGA

Function

symbol description
gng12 Enables PDZ domain binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in extracellular exosome.

GO: NA

KEGG:

id description
ko04010 MAPK signaling pathway
ko04014 Ras signaling pathway
ko04371 Apelin signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04810 Regulation of actin cytoskeleton
ko04062 Chemokine signaling pathway
ko04926 Relaxin signaling pathway
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse
ko04725 Cholinergic synapse
ko04728 Dopaminergic synapse
ko04726 Serotonergic synapse
ko04723 Retrograde endocannabinoid signaling
ko04713 Circadian entrainment
ko05200 Pathways in cancer
ko05170 Human immunodeficiency virus 1 infection
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05032 Morphine addiction
ko05034 Alcoholism
ko04147 Exosome
ko04031 GTP-binding proteins

Ensembl:

ensembl_id ENSDARG00000098123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063859 False 829 processed_transcript 0.40 2 23955374 24053616
TCONS_00063860 False 349 mRNA 0.40 3 23955755 24053404
TCONS_00063861 True 219 mRNA 0.42 2 23955827 23959108

Neighbor

gene id symbol gene type direction distance location
XLOC_032852 sec16b coding downstream 23932 23891230 ~ 23931442 (-)
XLOC_032851 aanat1 coding downstream 335946 23616893 ~ 23619428 (-)
XLOC_032850 NA coding downstream 533636 23420169 ~ 23421738 (-)
XLOC_032849 CR376761.1 coding downstream 560475 23394843 ~ 23394899 (-)
XLOC_032848 NA coding downstream 740580 23210551 ~ 23214794 (-)
XLOC_032854 dr1 coding upstream 1805 24055421 ~ 24066676 (-)
XLOC_032855 RDH8 coding upstream 23338 24076954 ~ 24087279 (-)
XLOC_032856 scinla coding upstream 37334 24090950 ~ 24103666 (-)
XLOC_032857 si:ch73-389b16.1 coding upstream 87141 24140757 ~ 24143923 (-)
XLOC_032858 si:ch73-389b16.2 coding upstream 99200 24152816 ~ 24203980 (-)
XLOC_032846 NA non-coding downstream 936894 23018053 ~ 23018480 (-)
XLOC_032844 BX537277.1 non-coding downstream 1414298 22540982 ~ 22541076 (-)
XLOC_032859 NA non-coding upstream 164312 24217928 ~ 24219177 (-)
XLOC_032864 BX004768.2 non-coding upstream 732211 24785827 ~ 24785943 (-)
XLOC_032865 BX005463.1 non-coding upstream 788554 24842170 ~ 24842286 (-)
XLOC_032866 NA non-coding upstream 796477 24850093 ~ 24869146 (-)
XLOC_032870 CR790380.1 non-coding upstream 1134407 25188023 ~ 25188783 (-)

Expression


Co-expression Network