G1380997 (LOC106567312)


Basic Information

Item Value
gene id G1380997
gene name LOC106567312
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46908354 ~ 46909889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577487
TCGTTGAACAGGAAGACCTCCCGTTGGTGAACTCCTGTCCTCTGGGGTCGGTTGGGGTCAGGCACCTCATAGAGCTGACAGCAGCATACCAGCCTGCGGTGTGGCAGAGACATCACCTACACAAAACACAAAGAAAGAAAATAGTTCAGTATTACATCTCCCTAAGGCTGAGCAGTAACAGCTTCTGTTACAGCTTGTCAATGCAGTAACACATAGCAACAACACATAGTACCACAGATGTTGACAGGCTAAACAGGGAAATGACACGGGGCTACAGTTACATTTCAAGCCCAGACAACTCACAGGCTTTTTGCCTACTATGACTCTCTCTACCGCCTGCACTTGGGACACGTGGTCGTCGTTGGTCCTTAGCTCCCACTTCTGGATGCGCTGGTAGATCCCAACCAACAGATCCCTGGGAATGTCCTGGCCGTTGTCCACTCCTCTGAGGTTCTTGATGAAGTCCTCtatcttcatcttcctctctgcCTTGACGTTGGGGCTGTACATATCCGTGTTGAGGAGGATGATGGCGAAGGCCAGGATGAAGATGGTGTCTGGATTCTGGAACTGGCGGACCAGCGTCGGGTTACACACACAGTACCGCTGACTGAAAGCTTCTATGAGCCTCTCTACTTTCTGGGCTTCTCCTTGAACTCTAATCTGGGCCTGGAACTTCCTCAGAGCATCGTCCAGGTCCATACCTGAGAAGTCCATCTCGTCCAccacacagTCCAGTACGTCCTTGTTGAACTGTTTCTGCCGGTTGCCGAGGAATTCTCCGATCATCTGTCTGCTAAGGCCCTTCCTCTCCAGGATGAAGCGAGCGATCCCGACCGGAGTGTCGGACACAAAGCCTCTCTCGATCAGGTACTGTATCCCTTTTTCTGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577487 True 892 lncRNA 0.52 4 46908354 46909889

Neighbor

gene id symbol gene type direction distance location
LOC110492774 LOC106567235 coding downstream 112519 46777670 ~ 46795835 (-)
LOC110492773 timm17b coding downstream 137805 46765870 ~ 46770549 (-)
LOC110492770 LOC106567233 coding downstream 142519 46763802 ~ 46765835 (-)
LOC110491077 LOC106567232 coding downstream 147259 46724969 ~ 46761466 (-)
LOC110492768 LOC100380661 coding downstream 185754 46706224 ~ 46722600 (-)
LOC110492777 LOC106567238 coding upstream 35352 46945241 ~ 46974583 (-)
LOC110492780 NA coding upstream 103696 47013585 ~ 47015061 (-)
LOC110492783 LOC106567244 coding upstream 119668 47029557 ~ 47034701 (-)
LOC110492784 NA coding upstream 130699 47040588 ~ 47042845 (-)
LOC110492137 LOC106567248 coding upstream 172049 47081938 ~ 47089563 (-)
G1381021 NA non-coding downstream 39398 46863497 ~ 46868956 (-)
G1381025 NA non-coding downstream 39642 46863725 ~ 46868712 (-)
G1380966 NA non-coding downstream 131404 46776714 ~ 46776950 (-)
G1380965 NA non-coding downstream 131927 46776193 ~ 46776427 (-)
G1380895 NA non-coding downstream 305349 46602115 ~ 46603005 (-)
G1381022 NA non-coding upstream 34128 46944017 ~ 46944970 (-)
G1381100 NA non-coding upstream 95462 47005351 ~ 47010494 (-)
G1381106 NA non-coding upstream 115192 47025081 ~ 47025339 (-)
G1381036 NA other downstream 29208 46878611 ~ 46879146 (-)
LOC110492767 LOC106572444 other downstream 239760 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 306979 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 488476 46416560 ~ 46419996 (-)
LOC110492148 LOC106567259 other upstream 515423 47409235 ~ 47908274 (-)
G1382721 NA other upstream 1033490 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1372324 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2274419 49179653 ~ 49196706 (-)

Expression


Co-expression Network