G1381100


Basic Information

Item Value
gene id G1381100
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47005351 ~ 47010494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577609
GGCAAAAACATCTGGGTGATCAGACAGAAACAGTTGTCAGGGGATCAACTTTGTATTCCGGTTTAAAAAAAAGAGCAATTGAGTTGGGATGTTTACTGCTTTAAATGTCATTGTAGGAGGACAACTGTGAAAATAGGAGGGGGGGAAAAAAGGTTGTATTATTTGTTATATGTAAGCTCACAATGCTGTAAATATGTTCTATTTCACAGAAAGCTTACAGGTGCTGAGCCATCGGGACATGGGCAGATTCCACGAGGTGGCCACCTCCACCATAGATCTGGGAAACTCCACATGAAGGGGCCTAGCTACAGTCATATCCCTGGAGAAGAGAACACAGGCATTTCAGTTGGGCTGTTTGAGGGGTAAAAGAGAACTGGGGGGGTGGCAAACAAACTATTTAACTTATGGCAAGTCTATGTCAAGCCTAGTCACCATGATGCTTCAGTGCACTGACCATTTGAGATTGTCTTTCTCTTCAGTAAAGCCTGCTCCAGCCAGAGTGGTGCTGGTCTCACTCAGGTAACCCACAAAGTAGTTGCTGAAGTGGAAGGAGAGTGCATTCTCGTAGGCTAGGAGCCAGATTTTTAAGTCTCATGGCATGAGTGGGCAGGGCAGACAGACAAGGTTGGGGGAATGATTGGTGTACAGACGTGCAGGTGACAGGGAGGTGGCACAGCTGCTGAGTTAGAAATGGACATGCAGCATTAATTACAGGGACAGGCGGGGGACATTCTATCGTCATAATATCAGATAAATAATTACCCAATCTTCCGTTTTGTTTTGCTGGGGATAAAGCCCAGGCAAGACAAGACCATTTATTGAATGGGAGAGAAAGAAACAAATGAGAATCGGACCGTTACACTACTGAAACACATTACTCAAACAGCTTTCCTACAAAAACATTTAGGGGAGAGTAAGGTTAGTTCAGCcaaaggggtaaattgagccacccttgtttctaggaaaccatacacaaaatgaataatttgaccaaatatttaggaagaggtcaccatttcatggagtctgtaaaggaagaaaccacatggaaaaagtggttagCAAAGTCGGGTCCAAAACacagattttcaccaagtcaaatgaatTTATTGTGTTAAGAGGTTTTATGATGTTtctatctaaaccaaagtagatgtTTTTAAGATGGTTCGATAAATctgttggggtctctataagcttcaatatcagctcctaaacctagcatgaaagtgcatccttgtagctgtatGGGCTAAtctagtcaaaatgtttgccttggggttgagcaaattgaagtgttttcttcccaggcataatgcaaggcattatcaTTGGCAacatgaggtaacaacagggcctgaCCTATGataaaagtgttaaaaaaagaaGTATTTGTTAGGTGTTATGCCTGAGCAGCACCTAAcccaaacccttaccctaaacggAGTATCCAAATCCCCACCCTCCCCATACACTGATACATCTTCTCTTTCCCTTCTTTGAGTGCATCCCTCTcctaaatcatgttttttttattgatgttttgtttTGACTCCTATTTTTtggtttattttcatttttataaCTGTAAAGCGACTTTGGGTCCTTGAAAAGCGCTACATACCCCAAGTATTATTATTAAAAGATGCTTAAAATGttgaaaatcattttaaaaacgATTgcgattgtgttgaattgtgtttgggaaataaagatataCATGGTTCTAAAAAAGTAGTGGTATTATTTAATTCAGTACAGAAACGTGTAGGCGACTTAACTTACCCCATAGCCCGGCTAAGTTGTGCCAAGAGAACACCTTTTTTGGACAAGCAATTgcttcaaaactgtaatgtttacatgtaTTCAGATTATTTCCAGGTATACACTTCATTCTACAGCTAGAAGACTCCTGATATCGCCAGGAGTGAtgagtatatatattttttgtcgttgtctgttgtggtctagtactgtctttttgcTAGCTAGGGCCATCTCCTTTAAGTCTTGTAAGTCTGTTttcccagtagcctacttggtgtgtgaactgctgactgctcatCATTTGCAGATTgttgttgacacatcaaccaggatcaAGAGTCAGGGCAATTTGTGACTTGTTTCGgtaatcagtggctgtattggAGAGGGAGTGGTTTCACCTCTCCTAGGCAATGAGCAATCAGTACAGGCGTGCTCTCCACCTCTGCTAGGCAATTAGCAATTATTGTTAGTTATTCAGTCtccctttttttaaattgatgtagTTCTGGCCTTGAGCTGTTATTGTCTATTAAGGTTCTGTGCTATTTCATGttgtgtgtggaccccaggaagagcagctgcctCTTTTGCAACAGCTAAGGGGAGCCTAATAAAATACCCTGGTTTCTCAGCGGCAGCTGTAAGTGGCGGTTTTGTCACAAAATTAAGACCGTCGCTGAAACAAAGACTGTTTTGCCGAGTTGTTCTGTGGAGTTAATCGAGAAAGGAAAAAGAGGAAGGCTCCACACTACTCTCGCACCGGAGTATCTTACCTCGTTATTTACAGATGATCAAATGTTGCTCTTTTGTAGCTTTGTcaactgtgtgtgttttctatacctgttcGCACCTCTCCCTGTAGGCGTTACAGACACCCCTTGGCTGCAACATTTCTAATTTAGTtgcccttcagtcccttgactttttgtccctgacggagacatggatcactccagagaacaccgTTACTCCAGCTGCTCTTTCTTCATCTGACTGTTTTCTCTCATAGTCCGAGAGCATCTGGTCATCGTGGTGGTGGCACAGGGCTACTCATTTATCCTTAGTGGAGATTTGatcttttctccatctctcacctgtccatctccttatttgaattccatgctgtcactgtcaattgtccactcaagcttaacattattgtcatctatcacccaccaggtgcccttggaGAGATTCTCAgtgagcttgacaccttgattAGCTGATTTCCTGACGATGGCTCACCCCTCTTCGTGCTTGGCAACTTCATCCTCCCGACGTGTGCCGTTTGATTCATTTAAttccaactctctctttcccctcaccCTTTCCCAAACCCCTtccaactcacaaggcaggcaatacgcttgacctcatctttactagagaCTGCTCGCCTACTAATCACACtgcaacccccctccaggtctctgatcactactttccTGTTCTGtccacctctcctccaaccctaaccactcagcCTCTACCCAGATGGTAATGCGCCGTTGcaatcttctctttctctctcccactgttctggcctcttctatcctatcatctctcccttctgctaaatctttctacctcctgtctcctgattctgcctcttcgaccCTACTCTACACCTTTTCCGCGTCCTATGACTcacactgtcccctttcctcccggcCCGGCTCAGCCTTCCCCTCCTGCTCCGTTACTGAGTGGCTCATTGCGAGCTTACAGAATGGGCTAAAGGCAGCTgtgaggacctatcatcctttcactccctcctctccaccttctcttcctctgtatctgcggctaaagccactttctaccACTATAaatttcaagcttctgcctcCAACCCCAGGAAactcttttccaccttctcctcccttctgaatcctccactccctctcagCGGACGACTTTGTCAATCATTTTGAAAGAATGGTTGACGACATCCgctactcattcactcagcctattgagtccactggtctcactcacacagaactaccctatgCCTTGACCTcgttctcccctccctctccagaTCACATTCTGCGACTAGTGAGCTCTGGCTGCCTGACAACCTGCCCGCTCGACCCCCCtgctcccttctccagaccatctctggagatcttctcccattcctcacttccctcatcaactcatccctgagcACTGGCTATGTCCCCTCTGACTTAAAAATGGCCTGAGTTACTCCAcgcctcaagaaaccaacacaaCATATCTGACATCTAATACTATAGACCTGTCTCCCTTCAGCACACTTGAGTGTGCTGTCTCTGATTAACTTTCTtgctatctctctcagaacgatcttcttgaccctaacctgtcaggcttcaagacgggtcacttAACCAAGACTGCTCTCCTCTGTGTCCCGGAGGCTCTCTgctctgccaaagctgactctttctcctctgttctcatcttactagctaaattactaaaatggcTCAACTTAGTCCACCCTCCCCTATATTACACTTTTTTTGGACAATCACAAACATCAATTTCTGTGGATGCTTAACTGACCTACAGTAAAACATTACAACAGCACTAAGAGGTTAGCTAATCCACTCACTTGCGTAGCAGCCTGTCCCcttgaaccatcagatcctcctctcagggctgggcatctcaggctctgcacactctttgattgcatcctacctggcaggccactctaccaggtgatgtggagaggatctgtgtctgcaccacatactctcactactggtgtcccccagggctcggttctaggccctctactcttctcACTATACACCAAGTTACTCATCtccatcatatcctcacatggtctctcctatcattccTATGCGGacacactcaactacttttctccccccccccttctgacacccaggtggcgacacgcaTCTCTGTGTGCCTGACAGACATCTCCACTTGGATGTCgtacctcaagctcaacctcgacaagacagAGCTGCTCTTCCTTCCAGAGAATGCCTGCCtgctcaaagacctctccatcatggttgacAACTCCAGTGTCACCTTCCCAGAGTGCTCCCGCACAGCCCAGttcaagctcttctctgtcctggcacttcaatggtggaaccagcttccccctgaagctaggacagcaga

Function

NR:

description
reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577609 True 4926 lncRNA 0.45 2 47005351 47010494

Neighbor

gene id symbol gene type direction distance location
LOC110492777 LOC106567238 coding downstream 30768 46945241 ~ 46974583 (-)
LOC110492774 LOC106567235 coding downstream 209516 46777670 ~ 46795835 (-)
LOC110492773 timm17b coding downstream 234802 46765870 ~ 46770549 (-)
LOC110492770 LOC106567233 coding downstream 239516 46763802 ~ 46765835 (-)
LOC110491077 LOC106567232 coding downstream 244256 46724969 ~ 46761466 (-)
LOC110492780 NA coding upstream 3091 47013585 ~ 47015061 (-)
LOC110492783 LOC106567244 coding upstream 19063 47029557 ~ 47034701 (-)
LOC110492784 NA coding upstream 30094 47040588 ~ 47042845 (-)
LOC110492137 LOC106567248 coding upstream 71444 47081938 ~ 47089563 (-)
LOC110492139 s38a3 coding upstream 79308 47089802 ~ 47103227 (-)
G1381022 NA non-coding downstream 60381 46944017 ~ 46944970 (-)
G1380994 NA non-coding downstream 88433 46906634 ~ 46916918 (-)
G1380997 LOC106567312 non-coding downstream 95462 46908354 ~ 46909889 (-)
G1381021 NA non-coding downstream 136395 46863497 ~ 46868956 (-)
G1381106 NA non-coding upstream 14587 47025081 ~ 47025339 (-)
G1381112 NA non-coding upstream 34119 47044613 ~ 47044824 (-)
G1381123 NA non-coding upstream 48349 47058843 ~ 47060965 (-)
G1381036 NA other downstream 126205 46878611 ~ 46879146 (-)
LOC110492767 LOC106572444 other downstream 336757 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 403976 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 585473 46416560 ~ 46419996 (-)
LOC110492148 LOC106567259 other upstream 414818 47409235 ~ 47908274 (-)
G1382721 NA other upstream 932885 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1271719 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2173814 49179653 ~ 49196706 (-)

Expression


Co-expression Network