G1381123


Basic Information

Item Value
gene id G1381123
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 47058843 ~ 47060965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577634
ataacttgCTATTTAATTAAGTCTGATTCAAAATGTGGACATCTTAAAAAACTAACAAACATTTTCTTCAAAACTACAGCATACTATAAAATTCAGCACACAAAATATAACTTTCTGTTATTGTACACTATATTTCAAATTCCAGATGGTTACAGATAACGATTTAAGCTTAACAGATCTGAACTCTGCACAAAAGGTTAACTCTAAATATGTACATGCCAATGCCATCCGTCTGTGTGGAAAAGAAATAACATAAAAGCACTAGTATTGTTACAGTAGTTTAAGAGCAACCCGTGGCTACAGTTACACTACTTCGTCAGACCACTCATCAATGCAAATATTCTCTCTGGACAGCACACCATTCAAACATCATCATGACTTAACTTTACTTATTGCAAAAACAACTTGTGATGATGCCAGTTTCTAAAAGACGAAAACAATGCAACAAGCTCAAAATATTACAATTCATGTCAAAATGTTGGACTTCACACATCTCAATCAATttgttaaaatatatttaaagatGGAATCCAGAGTAGCGGGAAACAGCGCCACTGGCTGAGGAGCAGTAAAGCATTGCAGTACATATTGTGCTCTTCAATCGCGCTTTGCAATGACATCAGAGGGGGAAAAGTGTTatttgcagtaacttctttgtcGCAATATCGCAAACGGACGTGGCTGTGTCGCCATGCAGGATTCCAACTTGAAAATGACTTAAATGAATACACTGACTAGAAAATATGGGAATATGGGTGTAGAGCTACACACTAAGTTTATGATAGAAAAGGCAAAAACACTGGTGACACATTACCTATATTTACCTTAAACTAACAAACTACTGTAGAATAAACTTATTTTTACACAGATACACCCAAACAATGCCAGGTGTGTAAGAAAACCTTATACGGTCCCTAAAATAAATCAGTTTCCTTTCATGAAAACACCCACGACTAGGTCATCCCTGAGAACAAGATTTGGTTCAGTATGAAGTGCATCCGAGACAATGTTTTGTAAATTATTACAACCcaccaacaaaaaaataaaatcacctATTTACTTCGACAAAGATCAGATTTACAATAGGAAAAGTTCAAGACATGATCACTGATACCGGTCAGTAAAATATCTAGGATTGTTTTATAGAATTACTTGCAACAAGAGATGCTCTCAAATTTTCGCAGTCTCAAATCTCATTTAATATGATTTTCTTTCCATTTTGTGCTGAGTAGCCCTATCAACTAGAGTGAATGACTCAAGAACGAATACCTTTTATGTTACAGAATTAAGATAGGCATGGCTCCTTAGATTCTTTATTACTGGGATCTAAATTTTAAACAGAAATCAAAACATTCGACGAAATGAGTGCCCTTTGCagccctttgatattttaagtagaaattgtgcacaaatgcaggtgagctggttcgactctttttggcaattttctagagttttgtggtggaaaactatACGGGTTGAGAATAAcatgtctatctatgggtaacagggttgacactCTAGAAAATGTTTTGGCAATTTCATTTTCTGAGGTGAAGCTCGCATTCaaattgcccctccctgttgcacaggACATGCTTCCATTTTCCCTGTTAAGAGGGATTTTATGGCTAATTTAAGAacatcgtcaaccctgttactttactTGTCACTTAACAGGCACCTGCTATAGTCTTGaaatgggaaaacatgttttttaacatgtgctctttatgacagaatgttaaaggTGAAACAAGGTATTTTTTTCACCAAGTTAAAGTACTCAAAAGGTGGACTGACCAGGAGGTCAAAACATTGTGTCTCTGCTTTTTTAATTTGCCCTAATTTTAAAAAGGCAATGAGGAACTTAGAATGTATTAATAATTTAGATTTTGTGCATAATAAGAAAAAAGGAAACTGGGAAAAATGAACAATCTTAGCACTCGTCCGCTTCTTCGTCCACCTCAATATCCTCCTCGTCATCTTGGTCTCGAACCTCGCGACCTCGTGATTCATCCAcctcttcatccttctctccgTATGAGTCCTCATCCTCTCTGGCCTCCTGGCCGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577634 True 2079 lncRNA 0.37 2 47058843 47060965

Neighbor

gene id symbol gene type direction distance location
LOC110492784 NA coding downstream 15998 47040588 ~ 47042845 (-)
LOC110492783 LOC106567244 coding downstream 24142 47029557 ~ 47034701 (-)
LOC110492780 NA coding downstream 43782 47013585 ~ 47015061 (-)
LOC110492777 LOC106567238 coding downstream 84260 46945241 ~ 46974583 (-)
LOC110492774 LOC106567235 coding downstream 263008 46777670 ~ 46795835 (-)
LOC110492137 LOC106567248 coding upstream 20973 47081938 ~ 47089563 (-)
LOC110492139 s38a3 coding upstream 28837 47089802 ~ 47103227 (-)
LOC110492147 LOC106572391 coding upstream 305267 47366232 ~ 47390987 (-)
LOC110492148 LOC106567259 coding upstream 348270 47409235 ~ 47908274 (-)
thap3 LOC106567262 coding upstream 857192 47918157 ~ 47927478 (-)
G1381112 NA non-coding downstream 14019 47044613 ~ 47044824 (-)
G1381106 NA non-coding downstream 33504 47025081 ~ 47025339 (-)
G1381100 NA non-coding downstream 48349 47005351 ~ 47010494 (-)
G1381233 NA non-coding upstream 151049 47212014 ~ 47212221 (-)
G1381236 NA non-coding upstream 154422 47215387 ~ 47215591 (-)
G1381241 NA non-coding upstream 161146 47222111 ~ 47222320 (-)
G1381245 NA non-coding upstream 186190 47247155 ~ 47247489 (-)
G1381036 NA other downstream 179697 46878611 ~ 46879146 (-)
LOC110491077 LOC106567232 other downstream 297377 46724969 ~ 46761466 (-)
LOC110492767 LOC106572444 other downstream 390249 46657459 ~ 46668762 (-)
LOC110492764 fkb1a other downstream 457468 46598697 ~ 46601691 (-)
LOC110492748 ppdpf other downstream 638965 46416560 ~ 46419996 (-)
G1382721 NA other upstream 882414 47943379 ~ 47946222 (-)
G1382894 mitf other upstream 1221248 48282213 ~ 48312958 (-)
LOC110492187 LOC106936674 other upstream 2123343 49179653 ~ 49196706 (-)

Expression


Co-expression Network