XLOC_032862 (ephx4)


Basic Information

Item Value
gene id XLOC_032862
gene name ephx4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 24329275 ~ 24358732 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063870
AAGTCTGCGCGCGGACAGTCTGTGAGCTCGCGCGTCGGTGCGCGGTGGGCCCAGACAGCATTCAAAACGAGCCGTTTAGTTCTGTCAGTGTTTACGGGGTGTAATGGTTCAGTCCAAAGTGTGAACACCTTTGGGACTGAGCATCTCTCCCTTCATACGTAAGCGCGACTCCGTACCGTCTACACAGGGATCCTCCCCGGTCGGGATGCGCTCGTGACGATGCGTCGGGGCTATTATGATGCGCGCCGTTCTTAAGAAGCAGGCGTAAACAGATCAATAGAAGCCGTGATCAACAAGCGTATCCCCGCAGTAATGTAAAGATGGCGAGACTGCTCCATAACTTGCTGTTGTTGACAGTCGGGCTGACGCTGAAGATCAGAGTGATGGGATACTGGTCTCTCATCTACGGTTACTGCGCGTTATGCACGGGCGTAGCGCTGATCAAACTTGGCTGGAATATCATCCTGCGACCGTCAACAACCTTTCAGTGGACGGTTCGTGAGATTCCCCCCTCGTGCCTGAATGACACGTCCTTGGGAACCCACTGTTATGTTAGAATCAAGGAGTCTGGACTCCGATTTCACTATGTTGCTGCTGGGGAACGAGGCAAACCGCTTATGCTGTTTCTGCATGGATTCCCAGAGTTTTGGTTCTCATGGCGTCACCAGCTCAGGGAATTTAAGAGTGAGTTTCGCGTGGTAGCAGTGGATATGCGAGGCTACGGTGAGTCTGACCTGCCCTCGTCCACTGAGAGCTACAGACTGGACTACCTTGTCACCGACATCAAGGACATTGTGGAGTATCTGGGATACAACAGATGTTTTCTCGTGGGCCATGACTGGGGTGGCATCATCGCATGGCTCTGTGCAATTCACTACCCAGAAATGGTGACAAAACTCATAGTGCTAAACAGCCCTCACCCCTGTGTATTCACTGATTATGCCCTTCGACACCCAAGTCAGATGCTCAAGTCAAGTTACTACTTTTTCTTCCAGTTGCCATATTTCCCAGAGCTAATGCTTTCCATCAATGATTTTAAGGCACTGAAGAGTCTATTCACCAGCCGCAGCACAGGCATCAGTTGTAAGGGCCGCTGGCTCACCACAGAAGACCTTGAAGCATACCTGTATGCCCTCTCACAGCCAGGGGCCCTCACTGGGGCTCTTAACTACTTCAGAAATGTCTTCAGTGTCCTCCCACTGAGTCACAGTGAAGTGAAGTCTCCAGTATTGCTGTTATGGGGAGAAAGAGACGCGTTCCTGGAGCAGGACATGGCCGAAGCCTGCCGTCTGTACATCAGAAACCTTTTCCGCCTCAACATCATCTCTGGAGCCAGTCACTGGCTTCAGCAGGACCAGCCCGACATCGTCAATAAACTCATATGGACTTTCATCAAGGAGGGAGAAGGCCGGAAAAACTACAGGAACTTATAATGGGGTCCTTCTCCCTCTAGAGCTCGTCTACAGAGGGGACCAGAGAAATGCCTGTGAACACAAACCAATGTAATGTTTAATGCAATCGTCGTTTTAAATTTGATACATCTAAGATATAGAGATGATTCAACCTTCAGTGAAGAGGAACagaataaaagcacattttaattggaGGGGTTGAATAGAGAGTAGTGTGttcaatcagttttttttttttttctctcaagttTGCACATGACATTCGCCTTAAGGTTTCTTGGTGATagtgtttaaaagtgtgttgCAAAATGTCTGTAAATTGTATTGTGTGGTGCCTTTTGACATACCATTTTGCAACATAAAAGATGTGCCATGTTTTTCTGAGACAGAGCTCTGGGTTGTGAGCCATTTGTATCATGAGTTTTGCTACTCTCTATAACACAAAACACAGGGGTCCTAAACCCCCTCCACTTCTCTATCAGGTAGTGTTGTCTTATAGTGGAAAGTAttgttcttctttttttgtatttaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggcttaaATATTTGAGAATGTCATTATTTTGATCTTACTGTATGATAAAACAAAGTGATGTTTCAATATTGTACACTTTTTTGTATCTCTTCCTAAAAACTGCATCTAACAGTAGAACCAGCACTGcgccattttgattttataaGCAAATAAATGATTGCCGGAACTCA

Function

symbol description
ephx4 Predicted to enable hydrolase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including EPHX4 (epoxide hydrolase 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko05207 Chemical carcinogenesis - receptor activation
ko05208 Chemical carcinogenesis - reactive oxygen species
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-080227-1 Predicted to enable hydrolase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including EPHX4 (epoxide hydrolase 4).

Ensembl:

ensembl_id ENSDARG00000099515

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063870 True 2207 mRNA 0.44 7 24329275 24358732

Neighbor

gene id symbol gene type direction distance location
XLOC_032861 si:dkeyp-85h7.1 coding downstream 9007 24318031 ~ 24320268 (-)
XLOC_032860 BX927081.1 coding downstream 27951 24296039 ~ 24301324 (-)
XLOC_032859 NA coding downstream 110098 24217928 ~ 24219177 (-)
XLOC_032858 si:ch73-389b16.2 coding downstream 125295 24152816 ~ 24203980 (-)
XLOC_032857 si:ch73-389b16.1 coding downstream 185352 24140757 ~ 24143923 (-)
XLOC_032863 brdt coding upstream 5946 24364678 ~ 24392915 (-)
XLOC_032864 BX004768.2 coding upstream 427095 24785827 ~ 24785943 (-)
XLOC_032865 BX005463.1 coding upstream 483438 24842170 ~ 24842286 (-)
XLOC_032866 NA coding upstream 491361 24850093 ~ 24869146 (-)
XLOC_032867 si:dkey-238n5.3 coding upstream 786533 25145265 ~ 25155086 (-)
XLOC_032850 NA non-coding downstream 907537 23420169 ~ 23421738 (-)
XLOC_032849 CR376761.1 non-coding downstream 934376 23394843 ~ 23394899 (-)
XLOC_032848 NA non-coding downstream 1114481 23210551 ~ 23214794 (-)
XLOC_032846 NA non-coding downstream 1310795 23018053 ~ 23018480 (-)
XLOC_032870 CR790380.1 non-coding upstream 829291 25188023 ~ 25188783 (-)
XLOC_032872 NA non-coding upstream 909219 25267951 ~ 25268308 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_00840521_00859645 EPHX4 coding CI01000340 null 840074 ~ 859645 (-)