Gene
RNA
| Item | Value |
|---|---|
| gene id | G1382933 |
| gene name | mitf |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 48323819 ~ 48324138 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mitf | Enables DNA-binding transcription activator activity, RNA polymerase II-specific and E-box binding activity. Involved in several processes, including negative regulation of cell migration; positive regulation of gene expression; and regulation of transcription, DNA-templated. Located in cytoplasm and nucleus. Part of protein-containing complex. Implicated in Tietz syndrome; Tietze's syndrome; Waardenburg syndrome type 2A; Waardenburg's syndrome; and familial melanoma. Biomarker of melanoma. |
| description |
|---|
| microphthalmia-associated transcription factor-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1579609 | True | 320 | lncRNA | 0.55 | 1 | 48323819 | 48324138 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492160 | frmd4b | coding | downstream | 51530 | 48242058 ~ 48272289 (-) |
| LOC110492161 | lmod3 | coding | downstream | 82323 | 48232398 ~ 48241496 (-) |
| LOC110492159 | uba3 | coding | downstream | 93608 | 48220758 ~ 48230211 (-) |
| LOC118939552 | NA | coding | downstream | 111599 | 48208293 ~ 48212220 (-) |
| LOC110491083 | fam19a4 | coding | downstream | 127122 | 48184977 ~ 48196697 (-) |
| LOC110492165 | LOC106567279 | coding | upstream | 9782 | 48333920 ~ 48343017 (-) |
| LOC110492167 | NA | coding | upstream | 18994 | 48343132 ~ 48347885 (-) |
| LOC110492168 | foxp1 | coding | upstream | 24329 | 48348467 ~ 48371945 (-) |
| LOC110492170 | eif4e3 | coding | upstream | 47899 | 48372037 ~ 48383460 (-) |
| LOC110492173 | LOC106567285 | coding | upstream | 159332 | 48483470 ~ 48521507 (-) |
| G1382876 | NA | non-coding | downstream | 100808 | 48222577 ~ 48223011 (-) |
| G1382875 | NA | non-coding | downstream | 105779 | 48217820 ~ 48218040 (-) |
| G1382873 | NA | non-coding | downstream | 109709 | 48213704 ~ 48214110 (-) |
| G1382872 | NA | non-coding | downstream | 110185 | 48213334 ~ 48213634 (-) |
| G1382935 | NA | non-coding | upstream | 1924 | 48326062 ~ 48326372 (-) |
| G1382937 | NA | non-coding | upstream | 3039 | 48327177 ~ 48327582 (-) |
| G1382938 | mitf | non-coding | upstream | 3808 | 48327946 ~ 48331925 (-) |
| G1382925 | LOC106567283 | non-coding | upstream | 66841 | 48390979 ~ 48393246 (-) |
| G1382894 | mitf | other | downstream | 10861 | 48282213 ~ 48312958 (-) |
| G1382721 | NA | other | downstream | 377597 | 47943379 ~ 47946222 (-) |
| LOC110492148 | LOC106567259 | other | downstream | 874954 | 47409235 ~ 47908274 (-) |
| LOC110492137 | LOC106567248 | other | downstream | 1234289 | 47081938 ~ 47089563 (-) |
| G1381036 | NA | other | downstream | 1444673 | 46878611 ~ 46879146 (-) |
| LOC110492187 | LOC106936674 | other | upstream | 860170 | 49179653 ~ 49196706 (-) |
| LOC110491086 | LOC106566907 | other | upstream | 1278980 | 49576512 ~ 49719539 (-) |
| G1384875 | NA | other | upstream | 1740683 | 50064821 ~ 50065817 (-) |
| G1385645 | NA | other | upstream | 2731493 | 51055631 ~ 51056061 (-) |
| G1385888 | NA | other | upstream | 2766507 | 51090645 ~ 51128648 (-) |
