G1382938 (mitf)


Basic Information

Item Value
gene id G1382938
gene name mitf
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 48327946 ~ 48331925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1579621
ACCGGTAACAATATTTTTATTGACTTTCATATTCGTCTCTAGTTTTCACACTCAGTTCCAATGAATGAGCTTGATCGTGACATCACTGATCCATCCCTAACCAGTTCATGACCATCATTACCTCCATCTCTCCTGGCAACAGAGCCGTCATCAGATTACAGTGGCAATCTCAGCAGAGGCGTCTATCTGAACTATATAAATAGAATGAGTAGAGCTGACAGTTTGCTCAATGTGTGAACAAACATGGCTCTTTGAAATGTTAGTGGCATACCCAAACTGCCATGGTAGTGGGCCCGATCAAAATGAAAATGTGTATTTACAAATAATAAGCTTCAAATCAACTGTCACCATTGCTTTTAATCGGACATGGTAGTTCTATGCATTCAGTGACATGCTGACATGGGTTCAGTCAAAGGGCAGTGAGTGAATGACAGGCCTGTGTCTAGATATCAGCAGACAGACCTGGGGTCAGTTTGACCATGAGGGCTATTCTGCAGTGGATTGTTACTGCAGAGAATGCCCCTTTAAGTGCATGGGCTACTTTGTGCTTTGCTTAACCTTCTGCCTGATTGCCATTCTTCTTAAGTTATCGTTCTATAAATAAGGAAGAAACATCCATACATAAAGCTACATCAGCTAACCTGTCAAAAAACAAATGTTAATTCTTTCTTTACATATTTTAGACTTTGAATTTGGAAACACATTTTGGCAGTCAACACTGAGGTACATTACATTCAGAAAAATTATAGGTCGTAAAAAAGAAGCTGATAATTCAGTAAAACTACATTTTGATTATTGCCCTCTGAGTGGAATTctgacataaaaaaaatataaataaatctaGCATCAAAAACATCCCAAACAAAACGGATGGCCTGGAGAGACATTCTTACAGTCCAGTGTTAGAGGCCATGTGGTCACGGGGGGCCCATAGcatggtcttctactgtctgacaAAATGCCCTTTCCTACTGCTTCCCTTAGGGACCTTGCAGTTCAACACTTCATACATGAAGCACCAAACaccagaaacaacaacaacatcccaGTGTATAGTAGTCCTCATAGGTCTGTGGGAAATTCAAAAAACAACTGTAAGGCACTTCACTTCAATGTAAATCATTCTGCTGGTCGCTTGTTATTAATCATTACAACATAATAGATGACCAGCCTAATGTGTCTAATGTCTTCTGGGCAAAACAGGCACAATACTGAGCTACAACTGTGATCATTGCATAGTTCCACAGACTTGAGGATGCACTGTAACCATGCTCTCTATACAGCGGTGTAATGTACAGTAGATAGTTATTATCAAAGGCATATTTGAGTATTTTGCTAAGTTGTTAAATAGTAGAAATATACATTAACAGTACAGTTTATAGTTTTAACTACAATCAATCATACAATACATTGTATGCATTTAAAAACCCTAAATATAATATTGTTAGTACATATAAAAATAAATGGTTACCAACCAAACCATTTTTCAATTTATGGATGTCATTCCAGTGTTTTGAGtgtgtaatacattttttttatcccaCAGCAGTGTCCTTATATTCCTTggcaatataaacattcacattACTTAAAAAAAGATCTGGAATATCTCAAAATGGATATTGGACAGGCAAATCCTAACAAGGgtacaacaaaacaaaaatgatttAGGAAATGGaccatttaaaaacaaaatgtatttttcttccTAGGAGATACACTTCTTAGGGCTCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTATAGCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTATAGCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTATAGCAAGTCAATCTGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTAAAGCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTATAGCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGTTATAGCAAGTCAATCCGTATCGCGGAAGGTCTGTGGTGTTACTGCTTGATTGAAATTTAAAAGCAATGTTCCCGCGTTCGCAGAGACTATATTCATgttaaacgctgcatatgtctgctcaattggaaattacctttacattttaaCATCCCTGATACGTCCACGATACGTATTGAATCCAGCCCTTAGTGAGTATTTCTTGCAATACATTTCCATCATATTATCAGAAATATCTTCATAAAGCAAAATCTGCTCGTATTGAAATCACTGTTGCATTTCTGACAACATTGGTAGACTGACCACATTCTGTACTATatgtgaaatgtttacaaatccTCTGACTAAGGCATTGTCACATTCAAGTTCAATCTAAGATGACGGTAAAGCACAAAAGTAATTCAAATAATGTATTATCGCTTCTGTCAAATTGCTCTGAACAGACTTGCTAAAAAGCAAGTAGTGTGTATCacaccaaaaatatatttaaccGCAATTTTTAGCTTTCATTCCGAGGGAATTACATTGTTTAAGATTTAAAAGCAATAAGCTCATCAATCAGGGTTTTATAACTGCTTATAAGcctgtcatatacagtaccatgatAACTATACACAGGTACGTGTCAGATATTGCTCCCTGACTCATTGTCATCAAAGTAATATAAAAATCAGACCATGATCgattaaaataaacaataaaaaatgtatttaaaatcaaTACATAAGAGAAGCTGAACTAAATTCAGTTTGAACGCTTTCAGAACCCAATGAtaccataaaataaaataaatattgggCTGAAAAATTAAATATATGTGTCAACACCTGAAAACCATCAACCAACCAACAAACAAACCAACCAGCAGCTGGCTGAAGTAGGAcaaggtggagggatggagataaaGATGCAGGTGGGTGGGCAGCAGTGAGTGCTAACAGCCATGGTCGTTCTCTTCCATGCTTATGCTGCCTGAGCAGCTGCTGTCCTTAGAGGCTCCGGGCGAgacagaggagagcagggggTCTCCCCCTCCCACCGGGGACAAGGTGTCCTCCATCCGGAGCTCGCCTGAGATTCCCCCGTGGCCCTCGGTGTAGGGAGAGGCTTCATCATTGAGCTCCAAGGTGGTGGACTGAACCTGGTCTGGAGTGCAGGCTGGGTGGTGTTGGTGCTGGGGGTCGACAGGGTACAGATCCTGGTGGAAATCTCCCAGGGCTGGCTCCTGCTTGATGCCTCGGGCTGAGAGCTCCGCTGAGCAGAGGGCAGACGAGTCTGTGGTCAGACCATGGGCACGAGCCTGCATCTCCAACTCCTGAACCCCatcaagaaagaaagaaagatagaaacaAAAGGAAAGCGAGAGTGTTATCAACATGGACTGTCTGTCAGCTGCATAACTAAAACCATCCAGAGGATAGAAGAGCCCATCTCGATTCAATTCaatacaattcaattcaaggggctttattggcatgggacacatatgttaacattgccaaagcaagtgaagtagatgatatacaaaagtaaaataaacaataaaaatgaagagtaaacattacactcacagaagttccaaaagaataaagacattacaaatgtcatattatgtatatatacagtgttgtaacgatgtgcaaatggttaaagtacaatagggaaaataaata

Function

symbol description
mitf Enables DNA-binding transcription activator activity, RNA polymerase II-specific and E-box binding activity. Involved in several processes, including negative regulation of cell migration; positive regulation of gene expression; and regulation of transcription, DNA-templated. Located in cytoplasm and nucleus. Part of protein-containing complex. Implicated in Tietz syndrome; Tietze's syndrome; Waardenburg syndrome type 2A; Waardenburg's syndrome; and familial melanoma. Biomarker of melanoma.

NR:

description
microphthalmia-associated transcription factor-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1579621 True 3715 lncRNA 0.40 2 48327946 48331925

Neighbor

gene id symbol gene type direction distance location
LOC110492160 frmd4b coding downstream 55657 48242058 ~ 48272289 (-)
LOC110492161 lmod3 coding downstream 86450 48232398 ~ 48241496 (-)
LOC110492159 uba3 coding downstream 97735 48220758 ~ 48230211 (-)
LOC118939552 NA coding downstream 115726 48208293 ~ 48212220 (-)
LOC110491083 fam19a4 coding downstream 131249 48184977 ~ 48196697 (-)
LOC110492165 LOC106567279 coding upstream 1995 48333920 ~ 48343017 (-)
LOC110492167 NA coding upstream 11207 48343132 ~ 48347885 (-)
LOC110492168 foxp1 coding upstream 16542 48348467 ~ 48371945 (-)
LOC110492170 eif4e3 coding upstream 40112 48372037 ~ 48383460 (-)
LOC110492173 LOC106567285 coding upstream 151545 48483470 ~ 48521507 (-)
G1382937 NA non-coding downstream 364 48327177 ~ 48327582 (-)
G1382935 NA non-coding downstream 1574 48326062 ~ 48326372 (-)
G1382933 mitf non-coding downstream 3808 48323819 ~ 48324138 (-)
G1382876 NA non-coding downstream 104935 48222577 ~ 48223011 (-)
G1382925 LOC106567283 non-coding upstream 59054 48390979 ~ 48393246 (-)
G1382997 NA non-coding upstream 115294 48447219 ~ 48447883 (-)
G1383073 NA non-coding upstream 264553 48596478 ~ 48614348 (-)
LOC110492180 LOC105022745 non-coding upstream 702406 49034329 ~ 49040181 (-)
G1382894 mitf other downstream 14988 48282213 ~ 48312958 (-)
G1382721 NA other downstream 381724 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 879081 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 1238416 47081938 ~ 47089563 (-)
G1381036 NA other downstream 1448800 46878611 ~ 46879146 (-)
LOC110492187 LOC106936674 other upstream 852383 49179653 ~ 49196706 (-)
LOC110491086 LOC106566907 other upstream 1271193 49576512 ~ 49719539 (-)
G1384875 NA other upstream 1732896 50064821 ~ 50065817 (-)
G1385645 NA other upstream 2723706 51055631 ~ 51056061 (-)
G1385888 NA other upstream 2758720 51090645 ~ 51128648 (-)

Expression


Co-expression Network