G1383437


Basic Information

Item Value
gene id G1383437
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49142415 ~ 49146676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1580164
AACTTGTTTTCCCCTTTCAAACCAATATTGTAATATTGACACCATCACAACAACTTTGATTCAGAATATCATCCTTATTATCATAATCATAATGATCTTTATGCATATTTAAATTAACCTTGTGTTACATTAAGATGAACAGGCACTACACCAGTTAGGAGATCAAATTACATCACTAACTATAAACATACACACGTCTGCTAATAGAGGGGTTTCACAACATGAGCCGTGTCCCCCTTGTGTGCATAAGGAAGAGAAAAATCAACATTAAAAAAAGCATTTACATATACACTGTTTTTACAGCCTCAATGTAGTTAGGTTTCATTTCCAACTCAACACAGTTGTACAGTTACAATAGAATAAAATCCTTAAATTACATCATCATATACAAATCTGACAGCGTGGGGTAACATCACGCTCTTATATGGTACATTGACAATTCCATTGCGATGCAATTCATACGATATGGTACCTATTACTTAATATGCTTTCCATTGCTGTTATTTTGTTGTAACACATTTGCATGTATGATACTACATTTTGTCTTAGTATTTGATCACttgcatttttttattattattttatttacaatTACACAACTCATACACGCTGAATGATAAAGATTTTTGTTTCCCAAAAAATATCTAcccgaggtgtgtgtgtgtgtgtaaaggctaTAAGATCATTTGATGATATTAGTTATTTTTTCTGGGCAGTTTACACTAAGATACATAACTTGTGAGCTGGTGATGTGTTCTCTCAACAGTGATACCAAGACCTGGTGAAATCTCCTCTGAAGCCATAACCAAAACACATCTTGCCAATATAATAATGTTCTATGACATCAAACTTGAGGCGGTTTAACCTCATGTTCATGACCCCTGTTCTGTGCAAAGCTTTCTGCTCTCACAACATTATTGAATGCCTGATTTAGATAGCCCACCATTGGCAAAAATATTTGAATCGGATAAACATCTGATAAACTAGATTTGTCAGCAAGTACTGTAATATTTTCTGTATATACAGTTTGTGCATTTAAACTGAGTTAGGGGCTGAGGGGGCTGAGTTAGGTGTGAGCATGTGAAGTATACTACCAGGAGCAATCTAAAGTAGAGTTAATTACTTCTGTCAAAGAAATGATTTCTGATATACTGTAGTCACTGTGGTATGCTCTTGTCTTCCCCCCTGTGGATCAACTATTGAATGATCAAATAAATACTGAGACAACAGGTAGCAGTTAGTTGCATGACAGGGTTATGTGATAGTTGAGTTATTGCATGAGGAAAGAGTTTTATGTATTTCAGATTTCGGTCATTCTTTGGCTCAGTAGGGGGCCGATTCCGACCCGAGTTAAGTGGCGTAAATGGAACATAGTCCCTTTTAATGAACTTTTATCTCTATGCTTGTActgaccttgaatttaagcatgcgaatagcatgctattcacctgctattcgTTCGGGGTAGAGATCTAAGAAACGAAGGCGTGACGGAGGTTTGTCTACAGATACGCCATATTCTGACCGTGACCTAATTCCCTAATAATTCCACTACCTTGACACTGTAGCGAATCTGCCGGTTCCAATTGGAAAAAGCATCCATTTTTTTTCTTATATAGAAATAACAGCATTATCCATGCACTGCAATGTTTCAATcgataagagctattgataagagctaggtaaatgagtaatctGTTTGGAGAAGGGGATTATAAATACACatagcaattgttttagatgatttGTCCTTATGATCCCAGGAGACGAATGTGAGACCAGTCATatggaagcaaactgaaaatCATATCAACATGACATGTATTGCGGCCTCTTTTCCGCAGTGAAATAGGCCATAAATAACTTTGCCATGATTTATTTGGATGAAATTTGGAGACCCAAGATATaggcttctgtagggctgaacctgGCTAGTTGATGTTTGTGCATTTGAATGTTTTAATTATATACCCAGGTTTTTCTCCTTTTTATTTTACCATTtgaatcatgttaaatattaggcAATATTGGGAGCCACcgtcagtaatacccacatacatttataAAACAGTCACTTTAGtgtcagtaaaaaaaataattgtagcTTACATTTTGCAtccttctattctattctgtttacctttctttcctctgtcaccTCTGTGTAGTTGTTGCTGAGGGTTGCTAGCATTAGTGGATCATATTAGGCTAACGTTGTGCAATAATTTGGGACATGTAGCATATTTGAATCATTCTGGAACTCAGACCACACGGTTCACAACGACTGGACCATCGTTGTCCAACAGTTCCATGATTAGGACTAGATTATTGTTCAACCCTCATACACCTTCCACTAATTCATGGATTGAATTTGAATATGATAACTTTCAGGATAATtcaaaccactgtattttttAATCATCAATATATTTCATGCATAAAGGCTTtccaaacctgttttttttatgatttatacatactttcctaacccttAAAATTTGCCTACATAATCTACAAGATCAGATCATTTTTAAATCTACCAGCTGGTGCTGAAACGGAGATGAATATGCATATATTGagatggctttctttcattgatccctataTTTGGAACCCGTTCTCTAGATGTATTCTAGTCTGTCGTCAAAGTTCTAATTAAAGGTTCACCGTaattaaagggatggcttaagataaatgtactgaaaaccctattgaatgaaaaatcccagagaaaatctgttggccagcaagtgggagggtttatTAGCTGTTTAATTAAATGCATTCAGCACGCACAAGGGAACCACGCCTGCAAAGAATGTTACGCTCCttcataaggtaagtctgaataccaactactgagaagtgcagTAGGAAAGGCATGTGTAGGAAAGGGCGTACACTCCTAAGTCAGATTTGGGCCCCTAGGAGAATGGGTTCATAAGTGCTTTTTGCCTTGTAGGGTTCTCCATGACAGTGGAAtacaacatgtctccatccaggCCCCTACAACTACATTCATGTCCACATTTTCATTTTATATCCTTAAAACAACTACATTTAAAGTTAATATGCCTGATTACGTCACCTGAACAATCAAACCTTTCTAGTTACCACTGACAGATAAAATAAAAGCAAACTGGTGATAATATCATGCCCACTGACCCCAAAAATACAGGTATTCTAGATAATACCCCCAATGAATTGAAATGAACAGGTATTGTAGATATACCCTGCAATGAATTGAAATGAGATGTTATGATTTAAGGGTGGTGATGGGAAGAGAGAAAAAAGGTATATACACCAACTCCACTTCCGGTTATGAAGTCAGACACAAGTTTGTGGTGCTATTCCAATGCTGTTTCTGTGTCTAATGGTGAACTCTGATCCTCTGCATTGGTTTTCATATCAGCGGATTTGTTGCATCTTGTAGCCTTAATATGGCTTGGAGGTTTAAGGAAAGCCTGTTGCATAGCACATTCTGAGATAAACACTTAGTGTAGCAATGCACACACTGGTAAAAGGGATTAGACCAAATCACAAAAAATAAAATCTATGATACATTTTGTGGTACTTTTAACAATACACAGCATTCCCAATGTAAACATGAGGACTGAACACATAGCATTGAAAATGCTACACAAAATGGCGCCATATACACACAATGCAGGCTGAGTAGCTTGTTCTGGTTAAACGGGTAGGTAGGTATAATTGGTTACATTATTGTCACACTGTTATAGGAGAATGTAGTGCAAATGTATTTTACATCAGCTGCATGATCTTTATATCAAACACAGCACAGATATGCAAAATGTGTCCCTGCATTGGCTCAATGTTATGTTTGAGTTTGTGTAGACTGGAATAAATGCTGCTCCTGTTTTAGTGTTTAAGTCCTCCCCACCTCAAATACTGGATGAATATAATATTGATATATTGTCTTTTCTTACGTTACTAAGATTATATTTAGTCAAGACTGCTTGGCGCATCTGTTGGGCAAGGGATGTGTTGTTCATAAGTCTCTGGCTCTGTGCAGTGCCATTGGATGGGACAGTCCGAGCTGCCTCCAATGGCATACCCTCCTCCTCTAGGGTCATTAAATTTCCTCGACGTAATTGGCCGGGTACAGTCCCTCTCGGCCTGTATCCAGGCGACCTCGACACCAGCCTTGGTCATCTTCATCCTCAGTCTTGGTCAGTTCATCACC

Function

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1580164 True 4204 lncRNA 0.38 2 49142415 49146676

Neighbor

gene id symbol gene type direction distance location
LOC110492190 LOC106567293 coding downstream 59581 49076567 ~ 49082834 (-)
LOC110492178 LOC106567289 coding downstream 94897 49043771 ~ 49047518 (-)
LOC110492180 LOC105022745 coding downstream 102234 49034329 ~ 49040181 (-)
LOC110492177 LOC106567287 coding downstream 171927 48650173 ~ 48970488 (-)
LOC110491085 NA coding downstream 594248 48547180 ~ 48548167 (-)
LOC110492186 LOC106566918 coding upstream 141 49146817 ~ 49159851 (-)
LOC110492187 LOC106936674 coding upstream 32977 49179653 ~ 49196706 (-)
LOC110492191 NA coding upstream 111361 49258037 ~ 49259636 (-)
LOC110492195 LOC106566910 coding upstream 262452 49409128 ~ 49517268 (-)
si:ch73-217n20.1 LOC106566909 coding upstream 388204 49534880 ~ 49543357 (-)
G1383396 NA non-coding downstream 77004 49064202 ~ 49065411 (-)
G1383394 NA non-coding downstream 80731 49061454 ~ 49061684 (-)
G1383391 NA non-coding downstream 83185 49058848 ~ 49059230 (-)
G1383073 NA non-coding downstream 528067 48596478 ~ 48614348 (-)
G1383505 NA non-coding upstream 104455 49251131 ~ 49251635 (-)
G1383506 NA non-coding upstream 105020 49251696 ~ 49251939 (-)
G1384397 NA non-coding upstream 131313 49277989 ~ 49278498 (-)
G1384420 NA non-coding upstream 156795 49303471 ~ 49305133 (-)
G1382894 mitf other downstream 829457 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1196193 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1693550 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 2052885 47081938 ~ 47089563 (-)
G1381036 NA other downstream 2263269 46878611 ~ 46879146 (-)
LOC110491086 LOC106566907 other upstream 456442 49576512 ~ 49719539 (-)
G1384875 NA other upstream 918145 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1908955 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1943969 51090645 ~ 51128648 (-)

Expression


Co-expression Network