G1384400


Basic Information

Item Value
gene id G1384400
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 49384035 ~ 49390274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1581250
ATGAATAAACATGGATTGATTTATTTGACAATTTAAAAAACACATTATACAGCCAGTACATTTACTATTATTTACATTTTACGGTATCAAATCTAACACAATACAATTATAGATTATTTTTCATTGGACTTATTTCCATTTGTGGTCCTTTTTTGATAATAGGCAGACACAGCAAGACTGGCAATACActacaggttataggctacagttCCAGATATCAGACTTAAATGAGGACTGTAGCAATCATTAAAAGTTCATGGTGCAATACAATGGACGGACTTATTGTTTAACGTTGTATATGATTTGTCTTATgaaattgtacacacacacacatatatatattttttttttaaaaggtcaaattataaaaaaattaaaagacGTGTATGTTGATGAAATCAATTACAGTTTAGGCTATCCCTGTGCCATTAACCATATTAGTGAGTTACCCTGGAACATTGCTGGAGTGAAAAGCTTGCTTGAGGATTAGTTATGGATTTGTTCATTTTACTTTTGAAATAGGTGAGCATCATCCACTTCCTTTCATCTTCAGCAGAGATGTTATGAGTACAGTAGTATCAAGAATCTGTTGATTCTGTCTCTAAAGAGGAGTTACTCTGTTCTGTCTCAGTATCTTTGGCAGCAGAGTATATATGTCCAGAAAATGTAGGAACGCCTAGAAAAACAGATTGACATAGGTAGATCACCAATGGGACATGTCATATTGCCCACAAATGATACATCGTTGATAAAGATGCTAAACATTAAAAGATAATCATCCTGTAAACGTTTTTTTATtagaatccccattagctgttgtgaaagcaacagcagctactcttcctggggtccacacaaaacatgaaatattaatagacaagaacagagcaaggacagaactacatacatataAAAAcagcacacatagcctacatatcaatacatacacacaacatatCTAGGTTAAATAGGGGAGAGGCTTTGTACTGTgtggtgttgctttatctgtttttgaaACCGGGTTTGCGGTTCATTTGTgcaatataagatggaagggagttccatgcaaaaatggttctatataatactgtacgctttcttgaatttgttctggatttggggactatgaaaagaaCCCTGGTGGCTTGTTTGGTggggtaaatgtgtgtgtgtcagagctgtgtgtacgttgactatgcaaacaatttggaatgttcaacacattaatgtttcttataaaaatatgaagtgacgcagtcagtctccactcaactcttagccaagagttTGCATAGTATTTATTTTAGCC

Function

NR:

description
nonclassical MHC class I antigen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1581250 True 1309 lncRNA 0.35 3 49384035 49390274

Neighbor

gene id symbol gene type direction distance location
LOC110492191 NA coding downstream 124399 49258037 ~ 49259636 (-)
LOC110492187 LOC106936674 coding downstream 187329 49179653 ~ 49196706 (-)
LOC110492186 LOC106566918 coding downstream 224184 49146817 ~ 49159851 (-)
LOC110492190 LOC106567293 coding downstream 301201 49076567 ~ 49082834 (-)
LOC110492178 LOC106567289 coding downstream 336517 49043771 ~ 49047518 (-)
LOC110492195 LOC106566910 coding upstream 18854 49409128 ~ 49517268 (-)
si:ch73-217n20.1 LOC106566909 coding upstream 144606 49534880 ~ 49543357 (-)
pfkfb2a LOC106566908 coding upstream 162886 49553160 ~ 49570716 (-)
LOC110491086 LOC106566907 coding upstream 186238 49576512 ~ 49719539 (-)
LOC110492200 rprd1b coding upstream 395373 49785647 ~ 49789953 (-)
G1384420 NA non-coding downstream 78902 49303471 ~ 49305133 (-)
G1384397 NA non-coding downstream 105537 49277989 ~ 49278498 (-)
G1383506 NA non-coding downstream 132096 49251696 ~ 49251939 (-)
G1383505 NA non-coding downstream 132400 49251131 ~ 49251635 (-)
G1384554 NA non-coding upstream 166222 49556496 ~ 49557490 (-)
G1384695 NA non-coding upstream 378287 49768561 ~ 49768975 (-)
G1384703 LOC106566904 non-coding upstream 383729 49774003 ~ 49775982 (-)
G1384896 NA non-coding upstream 707728 50098002 ~ 50103021 (-)
G1382894 mitf other downstream 1071077 48282213 ~ 48312958 (-)
G1382721 NA other downstream 1437813 47943379 ~ 47946222 (-)
LOC110492148 LOC106567259 other downstream 1935170 47409235 ~ 47908274 (-)
LOC110492137 LOC106567248 other downstream 2294505 47081938 ~ 47089563 (-)
G1384875 NA other upstream 674547 50064821 ~ 50065817 (-)
G1385645 NA other upstream 1665357 51055631 ~ 51056061 (-)
G1385888 NA other upstream 1700371 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1723129 51113403 ~ 51117850 (-)

Expression


Co-expression Network