G1384896


Basic Information

Item Value
gene id G1384896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50098002 ~ 50103021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1581791
catgttgtgtcttgtttctgtcctttcctttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttttgctcctgtctttgtcggattctcgtttgtgttactcatgcctgaaccagactatcgtcgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctac
>TU1581792
catgttgtgtcttgtttctgtcctttcctttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttttgctcctgtctttgtcggattctcgtttgtgttactcatgcctgaaccagactatcgtcgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctac
>TU1581793
catgttgtgtcttgtttctgtcctttcctttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttccctttttccctctgattagtcctctatatctctctctgtttttgctcctgtctttgtcggattctcgtttgtgttactcatgcctgaaccagactatcgtcgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcctgttcatctaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1581791 False 338 lncRNA 0.49 2 50098002 50103021
TU1581792 False 338 lncRNA 0.49 2 50098002 50103021
TU1581793 True 338 lncRNA 0.49 2 50098002 50103021

Neighbor

gene id symbol gene type direction distance location
itchb LOC106566898 coding downstream 126709 49950665 ~ 49971293 (-)
e2f1 LOC106566901 coding downstream 159114 49933079 ~ 49938888 (-)
LOC110491088 LOC106566900 coding downstream 164252 49927464 ~ 49933750 (-)
LOC110492202 LOC106566902 coding downstream 217180 49840098 ~ 49880822 (-)
LOC110492201 LOC106566903 coding downstream 264837 49801983 ~ 49833165 (-)
LOC110492208 LOC106566894 coding upstream 211895 50314916 ~ 50318773 (-)
mad2l2 mad2l2 coding upstream 918435 51021456 ~ 51031919 (-)
LOC110491089 lrrc47 coding upstream 938102 51041123 ~ 51043794 (-)
LOC110491090 fam57b coding upstream 973757 51076778 ~ 51077359 (-)
LOC110492214 LOC106566770 coding upstream 998762 51101783 ~ 51103933 (-)
G1384703 LOC106566904 non-coding downstream 322020 49774003 ~ 49775982 (-)
G1384695 NA non-coding downstream 329027 49768561 ~ 49768975 (-)
G1384554 NA non-coding downstream 540512 49556496 ~ 49557490 (-)
LOC110492195 LOC106566910 non-coding downstream 687319 49409128 ~ 49517268 (-)
G1384400 NA non-coding downstream 707728 49384035 ~ 49390274 (-)
G1384934 NA non-coding upstream 106287 50209308 ~ 50210181 (-)
G1384933 NA non-coding upstream 108480 50211501 ~ 50215831 (-)
G1384994 NA non-coding upstream 113088 50216109 ~ 50216338 (-)
G1384997 NA non-coding upstream 118654 50221675 ~ 50221904 (-)
G1385003 NA non-coding upstream 128413 50231434 ~ 50231638 (-)
G1384875 NA other downstream 32185 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 378463 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 901676 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1785044 48282213 ~ 48312958 (-)
G1382721 NA other downstream 2151780 47943379 ~ 47946222 (-)
G1385645 NA other upstream 952610 51055631 ~ 51056061 (-)
G1385888 NA other upstream 987624 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 1010382 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 1880113 51978399 ~ 51990025 (-)
spen LOC106566857 other upstream 2315855 52379551 ~ 52428869 (-)

Expression


Co-expression Network