G1385009


Basic Information

Item Value
gene id G1385009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50241871 ~ 50242357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1581908
CAGCTCGTAGGGTGAACATCCAGTCAGGGTAGCGTCAGGGTGTCTCTACGCCATATCCAGTCCAGAGCAGGCAGGCACAGTGTCAGCTCCCTCTATCCAGGCTAGCAGGGGAAAAGTGAGGGGCCGCAACAAAAGgcatagagggagggagaaacagatgAACCACTCTGAGCTGACTGGtggactccctctctctctctaacacacacagtcacatgtACGCATAACCCGTTCACAGTTGGTCCCCCTATCACTGACTTTTGGGTAACTTATGTCAGAGTTGCCTCAGAAGCTGAAGCGGCGAGTGGAGGAAAAGAAAGAGGATTAGAATGTGtgtgcagtggtgtgtgtgtgtgagcgagtgagagtgtgtgagagagaggagctggggagAGGGGTTAAGGTAGGAGGGACAGGCACAGCTTGGAGGCCGGAGGCAGACTACTAAAGACAATGGCAGGAAACACTATCAGGAGGGAAAAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1581908 True 487 lncRNA 0.53 1 50241871 50242357

Neighbor

gene id symbol gene type direction distance location
itchb LOC106566898 coding downstream 270578 49950665 ~ 49971293 (-)
e2f1 LOC106566901 coding downstream 302983 49933079 ~ 49938888 (-)
LOC110491088 LOC106566900 coding downstream 308121 49927464 ~ 49933750 (-)
LOC110492202 LOC106566902 coding downstream 361049 49840098 ~ 49880822 (-)
LOC110492201 LOC106566903 coding downstream 408706 49801983 ~ 49833165 (-)
LOC110492208 LOC106566894 coding upstream 72559 50314916 ~ 50318773 (-)
mad2l2 mad2l2 coding upstream 779099 51021456 ~ 51031919 (-)
LOC110491089 lrrc47 coding upstream 798766 51041123 ~ 51043794 (-)
LOC110491090 fam57b coding upstream 834421 51076778 ~ 51077359 (-)
LOC110492214 LOC106566770 coding upstream 859426 51101783 ~ 51103933 (-)
G1385003 NA non-coding downstream 10233 50231434 ~ 50231638 (-)
G1384997 NA non-coding downstream 19967 50221675 ~ 50221904 (-)
G1384994 NA non-coding downstream 25533 50216109 ~ 50216338 (-)
G1384933 NA non-coding downstream 26040 50211501 ~ 50215831 (-)
G1384934 NA non-coding downstream 31690 50209308 ~ 50210181 (-)
G1385025 NA non-coding upstream 71379 50313736 ~ 50314401 (-)
G1385066 NA non-coding upstream 74440 50316797 ~ 50317259 (-)
G1385072 NA non-coding upstream 86622 50328979 ~ 50329358 (-)
G1385123 NA non-coding upstream 179125 50421482 ~ 50421767 (-)
G1385125 NA non-coding upstream 181758 50424115 ~ 50424335 (-)
G1384875 NA other downstream 176054 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 522332 49576512 ~ 49719539 (-)
LOC110492187 LOC106936674 other downstream 1045545 49179653 ~ 49196706 (-)
G1382894 mitf other downstream 1928913 48282213 ~ 48312958 (-)
G1382721 NA other downstream 2295649 47943379 ~ 47946222 (-)
G1385645 NA other upstream 813274 51055631 ~ 51056061 (-)
G1385888 NA other upstream 848288 51090645 ~ 51128648 (-)
dffb LOC106566885 other upstream 871046 51113403 ~ 51117850 (-)
LOC110492226 LOC106572002 other upstream 1740777 51978399 ~ 51990025 (-)
spen LOC106566857 other upstream 2176519 52379551 ~ 52428869 (-)

Expression


Co-expression Network