G1384102


Basic Information

Item Value
gene id G1384102
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 50391701 ~ 50418540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1580905
AAGAGACTCCCTCCCAGGCAGGAGACATGGCAACGCACGCTCCCATCAGATGGCAATACGATCGGAGCGAGATCTCTCTTCCAGCGAGGAACACAGAGTCTGTGTGCATCAACCTGCAGTCCCAGATCCTCAACTGCTACAAGGAGAACCGGGAGCAGACACTGCAATGCTCTGACCTGGCCAAAACGTACATGCAGTGCATTGACGCAGCCAAGAAGAACCTGCTGGTAAACCATGGATGAAGAGCAATGGAGAACAGCAGTGGAAAATGCTAAAACTCATGTCCAGGAATAGTTTTCCTGAAGCACAAAAATTGGCAGTTCCAAACGTAGCACTCATTCTTATTTAGGGGCAGCGGGCTGCTTTGGTGTTAGCATCATGTCTTTTATACATTGTTTTAAGCAGACACTATTGTACATTTTTCAGGGTACAGTCGATATTTGAAAGAGGACTGACTGACTAAAGGTTTTAAGTcgtatatacagtacctgtcaaaagtttggacacacctactcatccaagggattttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacaaacagagacaggaacaatacccacgaaacactcaaagaatatgactgcctaaatatggttcccaatcagagacaatgataaacacctgcctctgattgagaaccactccaggcaaccatagacttacctagactacttcactaaaccacaatcccataacctacaaaaaaaacctagacaaaacacaccacataaatacccatgtcacaccctggcctgaccaaaataaataaagaaaacacaaaatactaaggccagggcgtgacacacacctcctcctccatgcttcacggtgctTCCCATGCTTCCCAgcaatcccagttcgacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaatacctcctttttgttcacgcatttagttcacaaatccaaattcacttAGTCCAGaagaaaagtcaaaaaagttatattacagtttgtagaaacatgtcaaacgatctATAgtatcaatctttaggatgtttttaacataaatcttcaataatgtttcaaccggacaattcctttgtctttagaaattaaacagtatcaaatcaaatcaaatcaaatttgtatttgtcacatacatgtgCGCGCTCGCTCTCACGGCCATGCGCATgacttagctcatggcattctgccagacctctttgtcaaacagctcttattcgctcccccttcacagtatacgcctgaaacaaggttctaaagactgttgacatctattggaagccttaggaagtgcaatcggaccaaatttacactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccatatttttgccatatgagttctgttatactcattcaaacagttttagaaacttcagagtgttttctatccaaatctactaataatatgcatatcttagcttctgggcctgagaagcaggcagtttactctgggcaccttattcatccaagctactcaatactgccccccagccataagaagctaacacttttttggttactacatgattccatatgtgttttttttatagtgttgatgtcttcactattattctaaaatgtagaaaatagtaaagaataaagaaaacccttgaatgagtaggtgtttccaaacatttgactcgtactgtatacatactttttaaaacatattttcagGCAATCCTGACCATTAATTTATCAGGCTTATATTATATTACTTCCTTGATGTCATTAATTAAATAATATCCCTATGCTAATGTATGTCTGATTCTTGGTTTGGCTATAGCTATAGCTGTACTTGTGACTATATCCATCCACTCACTTTATTTTCTTTGTAAACATAGAAAGAAACACATTTCTTTATAGTAATTCATCCACTTTTCCCTTTTATGCATAAAGAACGCATATAATACCATGaaagac
>TU1580900
ttttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacaaacagagacaggaacaatacccacgaaacactcaaagaatatgactgcctaaatatggttcccaatcagagacaatgataaacacctgcctctgattgagaaccactccaggcaaccatagacttacctagactacttcactaaaccacaatcccataacctacaaaaaaaacctagacaaaacacaccacataaatacccatgtcacaccctggcctgaccaaaataaataaagaaaacacaaaatactaaggccagggcgtgacacacacctcctcctccatgcttcacggtgctTCCCATGCTTCCCAgcaatcccagttcgacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaatacctcctttttgttcacgcatttagttcacaaatccaaattcacttAGTCCAGaagaaaagtcaaaaaagttatattacagtttgtagaaacatgtcaaacgatctATAgtatcaatctttaggatgtttttaacataaatcttcaataatgtttcaaccggacaattcctttgtctttagaaattaaacagtatcaaatcaaatcaaatcaaatttgtatttgtcacatacatgtgCGCGCTCGCTCTCACGGCCATGCGCATgacttagctcatggcattctgccagacctctttgtcaaacagctcttattcgctcccccttcacagtatacgcctgaaacaaggttctaaagactgttgacatctattggaagccttaggaagtgcaatcggaccaaatttacactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccatatttttgccatatgagttctgttatactcattcaaacagttttagaaacttcagagtgttttctatccaaatctactaataatatgcatatcttagcttctgggcctgagaagcaggcagtttactctgggcaccttattcatccaagctactcaatactgccccccagccataagaagctaacacttttttggttactacatgattccatatgtgttttttttatagtgttgatgtcttcactattattctaaaatgtagaaaatagtaaagaataaagaaaacccttgaatgagtaggtgtttccaaacatttgactcgtactgtatacatactttttaaaacatattttcagGCAATCCTGACCATTAATTTATCAGGCTTATATTATATTACTTCCTTGATGTCATTAATTAAATAATATCCCTATGCTAATGTATGTCTGATTCTTGGTTTGGCTATAGCTATAGCTGTACTTGTGACTATATCCATCCACTCACTTTATTTTCTTTGTAAACATAGAAAGAAACACATTTCTTTATAGTAATTCATCCACTTTTCCCTTTTATGCATAAAGAACGCATATAATACCATGaaagac
>TU1580911
ttttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacagagacaggaacaatacccacgaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccactccaggcaaccatagacttacctagactacttcactaaaccacaatcccataacctacaaaaaaaacctagacaaaacacaccacataaatacccatgtcacaccctggcctgaccaaaataaataaagaaaacacaaaatactaaggccagggcgtgacacacacctcctcctccatgcttcacggtgctTCCCATGCTTCCCAgcaatcccagttcgacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaatacctcctttttgttcacgcatttagttcacaaatccaaattcacttAGTCCAGaagaaaagtcaaaaaagttatattacagtttgtagaaacatgtcaaacgatctATAgtatcaatctttaggatgtttttaacataaatcttcaataatgtttcaaccggacaattcctttgtctttagaaattaaacagtatcaaatcaaatcaaatcaaatttgtatttgtcacatacatgtgCGCGCTCGCTCTCACGGCCATGCGCATgacttagctcatggcattctgccagacctctttgtcaaacagctcttattcgctcccccttcacagtatacgcctgaaacaaggttctaaagactgttgacatctattggaagccttaggaagtgcaatcggaccaaatttacactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccatatttttgccatatgagttctgttatactcattcaaacagttttagaaacttcagagtgttttctatccaaatctactaataatatgcatatcttagcttctgggcctgagaagcaggcagtttactctgggcaccttattcatccaagctactcaatactgccccccagccataagaagctaacacttttttggttactacatgattccatatgtgttttttttatagtgttgatgtcttcactattattctaaaatgtagaaaatagtaaagaataaagaaaacccttgaatgagtaggtgtttccaaacatttgactcgtactgtatacatactttttaaaacatattttcagGCAATCCTGACCATTAATTTATCAGGCTTATATTATATTACTTCCTTGATGTCATTAATTAAATAATATCCCTATGCTAATGTATGTCTGATTCTTGGTTTGGCTATAGCTATAGCTGTACTTGTGACTATATCCATCCACTCACTTTATTTTCTTTGTAAACATAGAAAGAAACACATTTCTTTATAGTAATTCATCCACTTTTCCCTTTTATGCATAAAGAACGCATATAATACCATGaaagac
>TU1580922
ttttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacaaacagagacaggaacaatacccacgaaacactcaaagaatatgactgcctaaatatggttcccaatcagagacaatgataaacacctgcctctgatttgagaaccactccaggcaaccatagacttacctagactacTTCACTAAACCACAATCacataacctacaaaaaaaccctagacaaaacacaccacataaatacccatgtcacacccttgcctgaccaaaataaataaagaaaacacaaaatactaaggccagggcgtgacacacacctcctcctccatgcttcacggtgctTCCCATGCTTCCCAgcaatcccagttcgacaataaatgtttgttttgttcgataaagtccatcatttatgtccaaatacctcctttttgttcacgcatttagttcacaaatccaaattcacttAGTCCAGaagaaaagtcaaaaaagttatattacagtttgtagaaacatgtcaaacgatctATAgtatcaatctttaggatgtttttaacataaatcttcaataatgtttcaaccggacaattcctttgtctttagaaattaaacagtatcaaatcaaatcaaatcaaatttgtatttgtcacatacatgtgCGCGCTCGCTCTCACGGCCATGCGCATgacttagctcatggcattctgccagacctctttgtcaaacagctcttattcgctcccccttcacagtatacgcctgaaacaaggttctaaagactgttgacatctattggaagccttaggaagtgcaatcggaccaaatttacactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccatatttttgccatatgagttctgttatactcattcaaacagttttagaaacttcagagtgttttctatccaaatctactaataatatgcatatcttagcttctgggcctgagaagcaggcagtttactctgggcaccttattcatccaagctactcaatactgccccccagccataagaagctaacacttttttggttactacatgattccatatgtgttttttttatagtgttgatgtcttcactattattctaaaatgtagaaaatagtaaagaataaagaaaacccttgaatgagtaggtgtttccaaacatttgactcgtactgtatacatactttttaaaacatattttcagGCAATCCTGACCATTAATTTATCAGGCTTATATTATATTACTTCCTTGATGTCATTAATTAAATAATATCCCTATGCTAATGTATGTCTGATTCTTGGTTTGGCTATAGCTATAGCTGTACTTGTGACTATATCCATCCACTCACTTTATTTTCTTTGTAAACATAGAAAGAAACACATTTCTTTATAGTAATTCATCCACTTTTCCCTTTTATGCATAAAGAACGCATATAATACCATGaaagac
>TU1580930
ttttctttatttttactattctctacattgtaggataatagtgaagacatcaaaactattgtAACGATCTTCATCTGATGGAACAGGAAAGATTGGATCAAAACagagcgtggtaagtgtccatgttaatttaatATCACTGAACACGAAATACAAAATAACCAAGTGAAACAACGGAAattgaaacagtcctgaaaggtgacaaaacacaaacagagacaggaacaatacccacgaaacactcaaagaatatgactgcctaaatatggttcccaatcagagacaatgataaacacctgcctctgatttgagaaccactccaggcaaccatagacttacctagactacTTCACTAAACCACAATCacataacctacaaaaaaaccctagacaaaacacaccacataaatacccatgtcacacccttgcctgaccaaaataaagaaaacacaaaatactaaggccagggcgtgacagtaccccccaaaggtgtggactcccggccgcacacctaaacccataggggagggtctgggtgggcgtctgaccacggtggcggctctggcgcgggtcgtggaccccactccaacataGTCTTAGTCCTTTTACTCCGCGTCCTTAGATTGGCGACCCttgccgccgaccttggcctagtaacctcgggactgaggggaagctcagacAGGTTgacggcagatcctggctgaatggcggatctggcggatcctggccgactggcggctctggcggatccatgctgactggcggctctggcggctcatgacaggcgggagactccggcggcgctggacaggcgggagactccggcggcgctggacaggcgggagactccggcg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1580905 False 2172 lncRNA 0.38 5 50391701 50418540
TU1580900 False 1647 lncRNA 0.36 2 50415145 50418540
TU1580911 False 1643 lncRNA 0.36 2 50415145 50418540
TU1580922 False 1648 lncRNA 0.36 2 50415145 50418540
TU1580930 True 856 lncRNA 0.50 2 50415145 50416055

Neighbor

gene id symbol gene type direction distance location
LOC110492209 LOC106566893 coding upstream 64880 50324145 ~ 50326821 (+)
LOC110492207 LOC106566895 coding upstream 80656 50241978 ~ 50311045 (+)
LOC100136219 LOC106566896 coding upstream 182504 50121066 ~ 50210247 (+)
LOC110492206 LOC106566897 coding upstream 376178 49996722 ~ 50015523 (+)
znf341 LOC106566899 coding upstream 440649 49939245 ~ 49951052 (+)
LOC110492210 LOC106566890 coding downstream 71697 50490237 ~ 50796195 (+)
LOC110492909 NA coding downstream 520184 50938724 ~ 50939714 (+)
LOC118939554 NA coding downstream 669561 51088101 ~ 51094492 (+)
c16h1orf174 LOC106566886 coding downstream 691568 51110108 ~ 51113467 (+)
nphp4 nphp4 coding downstream 700438 51118978 ~ 51310839 (+)
G1384110 NA non-coding upstream 27346 50360755 ~ 50364355 (+)
G1384093 NA non-coding upstream 54768 50336635 ~ 50336933 (+)
G1384092 NA non-coding upstream 55618 50335854 ~ 50336083 (+)
G1384086 NA non-coding upstream 62023 50329355 ~ 50329678 (+)
G1384058 NA non-coding upstream 77338 50313797 ~ 50314363 (+)
G1384140 NA non-coding downstream 2957 50421497 ~ 50421979 (+)
G1384141 NA non-coding downstream 4057 50422597 ~ 50422890 (+)
G1384147 NA non-coding downstream 11971 50430511 ~ 50430727 (+)
G1384161 NA non-coding downstream 26608 50445148 ~ 50445436 (+)
G1384162 NA non-coding downstream 27644 50446184 ~ 50446439 (+)
LOC110492182 LOC106566913 other upstream 1141826 49202107 ~ 49258042 (+)
LOC110492179 NA other upstream 1357563 49024001 ~ 49034167 (+)
LOC110492164 mitf other upstream 2078885 48282132 ~ 48331926 (+)
LOC110491080 LOC106572377 other upstream 3362509 47026122 ~ 47029192 (+)
G1379959 LOC106567238 other upstream 3443484 46945257 ~ 46948217 (+)
G1384247 NA other downstream 154152 50572692 ~ 50573050 (+)
G1386227 ajap1 other downstream 1107473 51526013 ~ 51526813 (+)
G1386254 LOC106566883 other downstream 1141613 51560153 ~ 51560878 (+)

Expression


Co-expression Network