XLOC_032878


Basic Information

Item Value
gene id XLOC_032878
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 26561981 ~ 26674943 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065154
CGTAAACCGAGGGTTTAAAGGAGATGATCCTAtgaaaaacGCTGCCAGTCGGAGTGAAAAGTTGCTGGAGGTCATCAGGGGTTTGCTTGATGTTGGCTCACGACATGCCAAAAACAACTTTTAACTTTCATTACAGTGTGTCTATATAATTGGCTGGCACAGCAGCCCGTGGGGGTGAGAACATTACCATTCTGTTAATTTTGGGCTGGTGTTCTCCGGATTTCAAGCTGCACTGCTCTCGGCTGTGCTCTGAAATGGAGAGGGAGGCTGAGAGGCGGTGGAACGGTAAAGCTTGATGGATATCAAGCCGACACCACTAAGAAACACACTTCATGCTCTCCAGACGCCTTTACCATCAGCGCCTCATTGAGGATTGACACACACATGGGCTTtgctttattgaaaaaaataaaaacaaataaaaatac
>TCONS_00065153
CGTAAACCGAGGGTTTAAAGGAGATGATCCTAtgaaaaacGCTGGTGTTCTCCGGATTTCAAGCTGCACTGCTCTCGGCTGTGCTCTGAAATGGAGAGGGAGGCTGAGAGGCGGTGGAACGGTAAAGCTTGATGGATATCAAGCCGACACCACTAAGAAACACACTTCATGCTCTCCAGACGCCTTTACCATCAGCGCCTCATTGAGGATTGACACACACATGGGCTTtgctttattgaaaaaaataaaaacaaataaaaatac
>TCONS_00065155
CGCACTcccactatgctatccgaactgtgcccaggcccatttcccagaTTGTTTGAGAATGCAATGTGCAATgtgaatgcaatgtgagtgcagtcCGTCGGTGGAGACGGAGGGGGTACAAGCATGCTTCTGCccggtttaaggcaactgtacatagtGCAATGTCAAACAAGCTTGGAAAGACACAAGgttgacagaatgttcatttcggggtgaactaatcctttttATCGTTTGAGGCACAGAGCGAATGAAATCAAACGGAGAGATGCAAGAAAAACATGCATAAAACAAAGTGATGACTGACAATGAGGGCATTATCATGATGAAGAAAATACAGTTACTGTCACATTTGGCTGCAGTAATCACACACAATTGTCAAAATAAAGCAAATCCCACCCTTAGTGCGTTGGACAAAGCTGACAGTATTGCTCTGAGGTGCCATATTCTCTTCCTTTCAGTCCTGTGAACAAAAAAGTGGGTAGCACAGCAAATGCATTTTAAGGATTGCCAAAGCATGATCGACACTCGTATAGTCTACAGGCATCTTGACACCAATCATTTACATAAACATTGTGCTGCACACAACATTATTTTGCATCCTAGTTTAAGTATGCCTATTTATTGAATTATGCAAATGGATTCTAAAATATTCCTCTTTTGTCTCTCGTCACACATGACAAATGACAAGGAACAACAATGATCGTCAAAATGCAAACATCTGAGTCATTTATGAAACATGATAATGAGCGAATCCAAAGGGAAAACATATTTTACCAACGGATGTGACAAAGGAAACCGCAAGAGATGTTCTCTGATGGTGCGCCGGTGACACAGGGACGCCGTTTTCCCAAATGTTTCTTTGACATCATCATTAGTGAATGTCTACACAAACATCTGTCCGGCGATACACAATGACAAGATGGCAGTCTGTTCCTGGTTTGTGAAGTGTCAGTGTAAAAAGTGTCTACATTTGTAGAAACCCTTAAATAAGTGCTTCCAATCCATAAAATCATTCATTGTTTTGTGTCCAGAatgcaatttaagaaaataaatgcatttgtttgttaC
>TCONS_00065156
CGTAAACCGAGGGTTTAAAGGAGATGATCCTAtgaaaaacGCAATGTCAAACAAGCTTGGAAAGACACAAGgttgacagaatgttcatttcggggtgaactaatcctttttATCGTTTGAGGCACAGAGCGAATGAAATCAAACGGAGAGATGCAAGAAAAACATGCATAAAACAAAGTGATGACTGACAATGAGGGCATTATCATGATGAAGAAAATACAGTTACTGTCACATTTGGCTGCAGTAATCACACACAATTGTCAAAATAAAGCAAATCCCACCCTTAGTGCGTTGGACAAAGCTGACAGTATTGCTCTGAGGTGCCATATTCTCTTCCTTTCAGTCCTGTGAACAAAAAAGTGGGTAGCACAGCAAATGCATTTTAAGGATTGCCAAAGCATGATCGACACTCGTATAGTCTACAGGCATCTTGACACCAATCATTTACATAAACATTGTGCTGCACACAACATTATTTTGCATCCTAGTTTAAGTATGCCTATTTATTGAATTATGCAAATGGATTCTAAAATATTCCTCTTTTGTCTCTCGTCACACATGACAAATGACAAGGAACAACAATGATCGTCAAAATGCAAACATCTGAGTCATTTATGAAACATGATAATGAGCGAATCCAAAGGGAAAACATATTTTACCAACGGATGTGACAAAGGAAACCGCAAGAGATGTTCTCTGATGGTGCGCCGGTGACACAGGGACGCCGTTTTCCCAAATGTTTCTTTGACATCATCATTAGTGAATGTCTACACAAACATCTGTCCGGCGATACACAATGACAAGATGGCAGTCTGTTCCTGGTTTGTGAAGTGTCAGTGTAAAAAGTGTCTACATTTGTAGAAACCCTTAAATAAGTGCTTCCAATCCATAAAATCATTCATTGTTTTGTGTCCAGAatgcaatttaagaaaataaatgcatttgtttgttaC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065154 False 428 lncRNA 0.46 3 26561981 26674943
TCONS_00065153 False 264 lncRNA 0.45 2 26561981 26674943
TCONS_00065155 False 1071 lncRNA 0.40 2 26661016 26662668
TCONS_00065156 True 953 lncRNA 0.38 2 26661016 26674943

Neighbor

gene id symbol gene type direction distance location
XLOC_032877 sox14 coding downstream 2060 26557979 ~ 26559921 (-)
XLOC_032876 NA coding downstream 252134 26290783 ~ 26309847 (-)
XLOC_032875 hs2st1b coding downstream 336167 26063962 ~ 26225814 (-)
XLOC_032874 lmo4b coding downstream 609111 25933736 ~ 25952870 (-)
XLOC_032873 PKN2 coding downstream 1177189 25312387 ~ 25384792 (-)
XLOC_032879 NA coding upstream 150007 26824950 ~ 26825924 (-)
XLOC_032880 hdlbpa coding upstream 199896 26874839 ~ 26895750 (-)
XLOC_032881 NA coding upstream 360709 27035652 ~ 27038371 (-)
XLOC_032882 stk25a coding upstream 366651 27041594 ~ 27057702 (-)
XLOC_032883 dtymk coding upstream 430019 27104962 ~ 27108844 (-)
XLOC_032872 NA non-coding downstream 1293673 25267951 ~ 25268308 (-)
XLOC_032870 CR790380.1 non-coding downstream 1373198 25188023 ~ 25188783 (-)
XLOC_032866 NA non-coding downstream 1692835 24850093 ~ 24869146 (-)
XLOC_032865 BX005463.1 non-coding downstream 1719695 24842170 ~ 24842286 (-)
XLOC_032886 NA non-coding upstream 815794 27490737 ~ 27491747 (-)
XLOC_032887 NA non-coding upstream 945732 27620675 ~ 27623521 (-)
XLOC_032890 NA non-coding upstream 1263546 27938489 ~ 27954601 (-)

Expression


Co-expression Network