XLOC_032883 (dtymk)


Basic Information

Item Value
gene id XLOC_032883
gene name dtymk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27104962 ~ 27108844 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063904
GTCTTTTCTCGGGCACCGTAGAAGTGGGAGGGCAAAGCGGCTGTTCAGGGTGTTGTTTAGAAAAGTACCGCGTAAACAGATCCAGGCCAAATAGCATTTTGTTCTTGCTGCTGTAAGTTATCGTTATAATTTTAAAAGGTTGTTTAACAGAGCCATGTCTTGCAGAAGAGGGGCCTTAATTGTTCTAGAAGGAGTTGACAGAGCAGGAAAAACCACACAATGCCAAAAACTAGTGCAGGCGATACAGCAGAGCGGACGGGCGGCAGAAATTATGCGATTTCCAGACAGAACTACTAAGATTGGACAACTCATCAGTTCATACCTGGAGAAGAAGAGCAATCTGGAGGATCACACCGTTCATCTGCTGTTCTCTGCAAACCGATGGGAAATGGTGCCTGTGATGAAACAGAAGTTGGAGGAAGGAATTAATCTAGTGGTGGATCGCTATGCATTTTCAGGAGTGGCTTTTACTAGTGCCAAGCCTgGCTTTTCTCTGGAATGGTGCATGAATCCAGATGTGGGACTTCCAAAACCAGACCTGGTCATGTTTTTACAGCTCAATCCCAATGTGGCTGCAAACCGCGGAGAATACGGAAATGAACGATATGAGACGAGTGCTTTCCAACGTACGGTTCAACAACGGTTTGAAGAGCTCATGCAGGATACCTCAATCAACTGGAAGgtGATTGATGCTGCGAGGACCATAGAAGAAGTCCACAAAGATATAAAAGACTTGAGTGAAAACATCATCAGTTTAGCTGAGGAACAGCCAGTTGGAGAGCTGTGGAGGTGAACTCATCTCTGCTGATGTTTTTATAAACTTCatcttttgtttttctgttaataATAGAGAAacttaagattttattttattttttaatgattaaataaataattcataaaataaa

Function

symbol description
dtymk Predicted to enable nucleoside diphosphate kinase activity; thymidylate kinase activity; and uridylate kinase activity. Predicted to be involved in dTDP biosynthetic process; dTTP biosynthetic process; and dUDP biosynthetic process. Predicted to be active in cytosol; mitochondrion; and nucleus. Orthologous to human DTYMK (deoxythymidylate kinase).

GO:

id name namespace
GO:0006227 dUDP biosynthetic process biological_process
GO:0006233 dTDP biosynthetic process biological_process
GO:0006235 dTTP biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004798 thymidylate kinase activity molecular_function
GO:0009041 uridylate kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

ZFIN:

id description
ZDB-GENE-990603-11 Predicted to enable nucleoside diphosphate kinase activity; thymidylate kinase activity; and uridylate kinase activity. Predicted to be involved in dTDP biosynthetic process; dTTP biosynthetic process; and dUDP biosynthetic process. Predicted to be active in cytosol; mitochondrion; and nucleus. Orthologous to human DTYMK (deoxythymidylate kinase).

Ensembl:

ensembl_id ENSDARG00000052103

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063904 True 908 mRNA 0.42 5 27104962 27108844

Neighbor

gene id symbol gene type direction distance location
XLOC_032882 stk25a coding downstream 47260 27041594 ~ 27057702 (-)
XLOC_032881 NA coding downstream 66591 27035652 ~ 27038371 (-)
XLOC_032880 hdlbpa coding downstream 209212 26874839 ~ 26895750 (-)
XLOC_032879 NA coding downstream 279038 26824950 ~ 26825924 (-)
XLOC_032878 NA coding downstream 430019 26561981 ~ 26674943 (-)
XLOC_032884 agxta coding upstream 4040 27112884 ~ 27123327 (-)
XLOC_032885 zgc:103559 coding upstream 17776 27126620 ~ 27139396 (-)
XLOC_032886 NA coding upstream 381893 27490737 ~ 27491747 (-)
XLOC_032887 NA coding upstream 511831 27620675 ~ 27623521 (-)
XLOC_032888 AL935299.1 coding upstream 587479 27696323 ~ 27727397 (-)
XLOC_032876 NA non-coding downstream 795115 26290783 ~ 26309847 (-)
XLOC_032872 NA non-coding downstream 1836654 25267951 ~ 25268308 (-)
XLOC_032890 NA non-coding upstream 829645 27938489 ~ 27954601 (-)
XLOC_032892 NA non-coding upstream 1015537 28124381 ~ 28130130 (-)
XLOC_032898 NA non-coding upstream 1875173 28984017 ~ 28986397 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_02329631_02332000 DTYMK coding CI01000340 null 2329606 ~ 2332000 (-)