G1386287


Basic Information

Item Value
gene id G1386287
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51516635 ~ 51521317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1583255
aaatgtagaaaaagtgaatGTGCTGTACCTAATTATTCAGGGATTATATATTAAAATAACTAAGGTTCAGATTCTTCAAACAGTGCTTCTAAGGCCACTATTGTGTGTATTTTTGGGGAATTGTAATACTTTTTTTGTGTTGTATTTATCAAGCACATGCTAATTGAAATTATAATTGGAATGATCATATTAACATCTCCTCACACAGGAGATTTATAAAGGTGTGTGACGTATTTACAATTGGAAGTAGTCTTTTCTATACCATAATGTCAGAAATGCATGCAATCAAGAAATTGATATCTGCACATCCCCCTCcagcaattaaaaaaaaaaaggtatcccTTCAAATTAGGTCCAAATTAGCTGTATATCTTGCACTGTGAATGCAGTCACAACCATGTATAATAATGTTCCTCCCTAAAGCTCACCTCTACTGTATGAAGGAATACAATCTCAGCTCTTTCATGCCAAGTGCTGTACAGGAATGTACTTTCCTGGTGCGTGGGGGTTGCTCATGGATGTGTGCTTGTGGAATATCAGTGTGTTTGCCTCGTCAAAACCTCCAGCATCATCAATGAGATGCAGAACCAGGGGGATTGGGAGCAGCCAATCAAAAACAATAAGTCTGGGCCACATGTAATACATTAATTAATTGATCAGTTAATTCAATTCCATATTTGGTAAGTCAGGACACTTGGACAATGCAAAAAATCTTTCATTACACTAGTGGGTTGGTAGAAagcacaaaaaacaacaacactcgATTGCAATTATTTTGTGTGGAACGCAATATGTACAGATGTAAAGATGGACTGGATTCTGTCCTGGGTTGAGATCTGCACTTACTCAAGGAGACAAACAAGATTCAGGCTTCTGCTATTCTGTTCCCTGAGCTCAAGGCAGAAGTAGACCTTTAGTATAGGTCCGAGATGAGTTAGCCTAAATCACTAAATCATATGTTTATGCACCTGGAGGGGTAAagaactgaccttggatcagagGCTGCGGTGCAATATTGACTCCATGTACACTATTCTCTCCCCTCACACACCAAAACACCATGAATGACAATGCCAATTTGGCCCAACATGTACGTTGAGGTTGAGTTACGTCAACATATATTTTTGGAATGAAGAGTGTTATCCTGATAGTCAGAGGGTTACTaaattactgtatattatacatgtgtaaatgtattttatatatatttgctTCTATTTGTGTACAGGTGTGTTCTATTTTTAAAGACCTGTCCCTTTTTGGGTAAGGTTCAGCTAGGTCGGGGATAGTGTCTTTGTTTACATGTGTAACTACAGTATTTCTTTCACAACACAAACTAACATTGTGCCAAGCTTCCTACCTGCACTTTCAAGCAGTACTTGTATTATATATTTAGCTAACTAATACAATACTTAAATAGAAGCTGCAATATTTTAAATACTGATCAAGGATTTGGGTTGTGAAAGGTTACAGAGCTACCGTCCATGAGAATCTACACAGACGTGAGAAGTTATTTTGATTGTATACTAGGCAGAGATCAGAATGCTGCTGCCTTGGGTTTCTTCAGGTATTGAAATCATTCACAAAGCTAAacgatagacacacacacatacacctgacCGAGACGACATATTTTTCTTTCTGGTGTTTTTTTTTCACACGGCGCCACACAACAACAATTTGTTCAGAGAAACAATCACAAGAatccatactactactacaactacacagAACTGACTGAAGTCTTGTTGCCATAACAACTGAAAATTTGTACTTTGTGACTCTTAAACTTTTATATTTGTGTTTAATATATCAATGAGTACCTATGTTAATTTTGTATAAGATCTATGAATatactacacacatacacacatacgcacacagaaGGACTGTACTATAAACAGTAAGTTTCTGTGTCAGCTAAATGTTGTATACTTTTATTTTGTGTCTTATGGATCACATCTCTCTTCTTTTTGTAGGTATTGGTAACGTTTGAATTTCCAGGTGATCTTGATTTGGTTACTCTTGTACTTCTAAGCTCTGTATTTGCAAGCACTGTAAATGCGATTCTCATTGGATTCGTCCTCTGTACATTTAGTACTCTGATGTTGCTATTAATAAAATTTCAAACACAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1583255 True 2135 lncRNA 0.36 2 51516635 51521317

Neighbor

gene id symbol gene type direction distance location
dffb LOC106566885 coding downstream 398785 51113403 ~ 51117850 (-)
LOC110492214 LOC106566770 coding downstream 412702 51101783 ~ 51103933 (-)
LOC110491090 fam57b coding downstream 439276 51076778 ~ 51077359 (-)
LOC110491089 lrrc47 coding downstream 472841 51041123 ~ 51043794 (-)
mad2l2 mad2l2 coding downstream 484716 51021456 ~ 51031919 (-)
LOC110492220 LOC106566883 coding upstream 1032 51522349 ~ 51603970 (-)
LOC110491091 LOC106566924 coding upstream 169566 51690883 ~ 51717957 (-)
LOC110492221 LOC106566882 coding upstream 200653 51721970 ~ 51738292 (-)
LOC110492226 LOC106572002 coding upstream 459297 51978399 ~ 51990025 (-)
LOC110492229 LOC106566874 coding upstream 477241 51998558 ~ 52069366 (-)
G1386218 NA non-coding downstream 6665 51509743 ~ 51509970 (-)
G1386166 NA non-coding downstream 51043 51465388 ~ 51465592 (-)
G1386157 NA non-coding downstream 57685 51458742 ~ 51458950 (-)
G1386146 NA non-coding downstream 65893 51450502 ~ 51450742 (-)
G1386144 NA non-coding downstream 66970 51449437 ~ 51449665 (-)
G1386293 NA non-coding upstream 13318 51534635 ~ 51534841 (-)
G1386295 NA non-coding upstream 15519 51536836 ~ 51537047 (-)
G1386301 NA non-coding upstream 19909 51541226 ~ 51541480 (-)
G1386304 NA non-coding upstream 22323 51543640 ~ 51543939 (-)
G1386307 NA non-coding upstream 27978 51549295 ~ 51549645 (-)
G1385888 NA other downstream 387987 51090645 ~ 51128648 (-)
G1385645 NA other downstream 460574 51055631 ~ 51056061 (-)
G1384875 NA other downstream 1450818 50064821 ~ 50065817 (-)
LOC110491086 LOC106566907 other downstream 1797096 49576512 ~ 49719539 (-)
spen LOC106566857 other upstream 897559 52379551 ~ 52428869 (-)
LOC110492250 LOC106566852 other upstream 1050393 52566433 ~ 52577143 (-)
G1388236 NA other upstream 1510615 53031932 ~ 53032921 (-)
LOC110492299 LOC106566805 other upstream 2209020 53730164 ~ 53757019 (-)

Expression


Co-expression Network