G1386227 (ajap1)


Basic Information

Item Value
gene id G1386227
gene name ajap1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51526013 ~ 51526813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1583194
TTCCATTGTAGGTGGTCTTGTATATAGGGGTCTGTTGGATCATCTCGTCCGTGTAGACGGGCACGGCGGTGCGCACACACTCGTGCGAGCACTGCAGGCTGTCGTTGTAGGCGGTGAAGATGTCCACCTTGCTGGGCACGCGGGCAGGGGTGAAGTCGGTCAGGTTCTGACAGCTCTCCTCCTGCTGATGGATCTTCCGCTGATGGCTACTGTGACGGCCATTCCCCGACTGTGCACAGCTACAAAAACACGTACAGTTTTTAAGGACAAGTGTAGTTATCAAGGCTGCGATGACCATAATGAGAGACACAGTGATTGTAATAATCTGGTGAACTGCCAGACCTGCAAAGAGACAaagacacaaaacacacagaaaCGCTTAGTTCCGAAGGGAACTGTTTTAAAGGCAGGTGGTGATTTGCAATGTTATAGAAAACTATATAGTGATATTTTAAAGATGTTTTTGAATGAGGATATGTGCTCCACATTGCACCTAGGGTGACCACATGTCCCGGATTGTGTGGGACAGTTACGCATTTTGTCCCGCGTCCTGCAACCAAACCATCATGTCCCCCATTTTATCAACAAATTCAAACACCACTCATTTAGAAAAAAAGGTTGATTTGTCCTCTATTTCAGTCAAAATTTCCAACCTGTCTCTTGAAG

Function

symbol description
ajap1 Predicted to enable beta-catenin binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction; cell-cell contact zone; and cytoplasmic side of plasma membrane. Predicted to be spanning component of plasma membrane. Orthologous to human AJAP1 (adherens junctions associated protein 1).

NR:

description
PREDICTED: adherens junction-associated protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1583194 True 666 TUCP 0.47 2 51526013 51526813

Neighbor

gene id symbol gene type direction distance location
nphp4 nphp4 coding upstream 215174 51118978 ~ 51310839 (+)
c16h1orf174 LOC106566886 coding upstream 412546 51110108 ~ 51113467 (+)
LOC118939554 NA coding upstream 431521 51088101 ~ 51094492 (+)
LOC110492909 NA coding upstream 586299 50938724 ~ 50939714 (+)
LOC110492210 LOC106566890 coding upstream 729818 50490237 ~ 50796195 (+)
cfap74 cfap74 coding downstream 210782 51737595 ~ 51787114 (+)
LOC110492222 LOC106566880 coding downstream 276248 51803061 ~ 51862196 (+)
nadka nadk coding downstream 348327 51875140 ~ 51915893 (+)
LOC110492224 NA coding downstream 389313 51916126 ~ 51920772 (+)
LOC110492227 LOC106566879 coding downstream 397694 51924507 ~ 51963750 (+)
G1386226 NA non-coding upstream 546 51525262 ~ 51525467 (+)
G1386225 NA non-coding upstream 1147 51524391 ~ 51524866 (+)
G1386224 NA non-coding upstream 2337 51516650 ~ 51523676 (+)
G1386188 NA non-coding upstream 39206 51486583 ~ 51486807 (+)
G1386182 NA non-coding upstream 42664 51483133 ~ 51483349 (+)
G1386228 NA non-coding downstream 68 51526881 ~ 51527092 (+)
G1386232 NA non-coding downstream 4591 51531404 ~ 51531653 (+)
G1386240 NA non-coding downstream 15802 51542615 ~ 51542912 (+)
G1386245 NA non-coding downstream 19335 51546148 ~ 51546379 (+)
G1386247 NA non-coding downstream 22252 51549065 ~ 51549412 (+)
G1384247 NA other upstream 952963 50572692 ~ 50573050 (+)
LOC110492182 LOC106566913 other upstream 2276138 49202107 ~ 49258042 (+)
LOC110492179 NA other upstream 2491875 49024001 ~ 49034167 (+)
G1386254 LOC106566883 other downstream 33340 51560153 ~ 51560878 (+)
G1386998 NA other downstream 755380 52282193 ~ 52286457 (+)
G1387286 NA other downstream 1264125 52790938 ~ 52791289 (+)
G1387575 NA other downstream 1794968 53321781 ~ 53326591 (+)

Expression


Co-expression Network