XLOC_032884 (agxta)


Basic Information

Item Value
gene id XLOC_032884
gene name agxta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27112884 ~ 27123327 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063905
GTCAGTACTAAAAGTGAGATGATTGGCCAAAGGGTAAAATGTTTGCCCACATTTAACTTGAGTTAACCATTACCTCAGTCTCTCAGTGCACTGGCAGCATTATGTCGTCTCTGTCTGTTCTTCCACCGGAATGTCTGCTAAAGCCTTTCCCTGTTCCTCAACGGCTTATGCTGGGACCAGGACCGTCCAATGTACCTGCACGGATCTCAGCAGCTGGAGCGCAGCCCATGCTGGGACACCTGCACACAGAAACCATTGAGATTATGAATCAGATAAAGAGCGGCATTCAGTATGCGTTTCAAACCAAAAACCGAGTGACTCTTGCCGTGAGTGGACCGGGTCATGCTGCGATGGAGTGTGCCATCTTTAACTCCCTGGAGCCTGGAGACAAAATCCTCATAGCAGTCAATGGCATATGGGGAGAGAGAGCTTCAGAGATTGCGGAGAGGATAGGTGCCAAGGTGAACACAGTTGAAACCATGGCTGGGGGGTATTTAACAAATGAGGAAATTGAGAAGGCATTAAACAAATACAGGCCAGCAGTGTTCTTCCTCACACATGGAGAATCGTCCACAGGAGTGGTTCACCCCATAGATGGCATAGGCCCACTTTGCCGCAAGTACAGCTGTTTATTTCTGGTTGATTCAGTAGCAGCATTGGGAGGTGCTCCTATCTGTATGGATGAACAAGGTATTGATATTTTGTATACTGGCTCTCAAAAGGTCTTGAACGCCCCACCAGGAACTGCACCAATCTCCTTTAGCGAGAGAGCATGCCACAAAATATTTAATAGGAAAACAAAACCAATCTCTTACTTCTTGGACTTAAACTGGTTGGCGAATTATTGGGGTTGCGACGACAAGCCTGTGCGCTCctaTCACCACACTGGACCTGTATCTTCTTTCTACGCTCTGCGGGAAAGTCTGGCCATCCTTGCAGAGACTggTCTTGAAAACTCATGGAAACGGCACAAAGAGGTTGCAGAGTACTTCCATAAAGGCTTAGAACAAATGGGTCTAAAACTGTTTGTGCAGGATAAGAAAGCAAGACTCCCAACGGTGACAACAATAGTAGCTCCGCCAGGATACGACTGGCGGGAAATTACAGGGTACATTATGAAGACCTTTAACATTGAAATCTCTGGCGGTCTGGGTCCATCTGCAGGCATGGTTTTGCGTGTAGGGTTGATGGGATGTAACAGCAACAAGGCCAATGTGGATAAAGTGTTGGAGGCTTTGGCTGATTCTCTTAAACACTGCCACAAGAGCAGAGTCTGACAACATTCCTCAATGAAAAGTCTCATTGCTGACACAACATCATCAGAAAAAAATTTAACTGTACTTTGAAATTGTATGCCATCCAACTTGagtgaataaaaggactaatcaACATGA
>TCONS_00063906
TTAATAGGAAAACAAAACCAATCTCTTACTTCTTGGACTTAAACTGGTTGGCGAATTATTGGGGTTGCGACGACAAGCCTGTGCGCTCctaTCACCACACTGGACCTGTATCTTCTTTCTACGCTCTGCGGGAAAGTCTGGCCATCCTTGCAGAGACTggTCTTGAAAACTCATGGAAACGGCACAAAGAGGTTGCAGAGTACTTCCATAAAGGCTTAGAACAAATGGGTCTAAAACTGTTTGTGCAGGATAAGGTTGGCACATCATAACAGGCCTTATATAAGATACATATCAAAtaagcactgaaaaaaatattgtcttacaGAAAGCAAGACTCCCAACGGTGACAACAATAGTAGCTCCGCCAGGATACGACTGGCGGGAAATTACAGGGTACATTATGAAGACCTTTAACATTGAAATCTCTGGCGGTCTGGGTCCATCTGCAGGCATGGTTTTGCGTGTAGGGTTGATGGGATGTAACAGCAACAAGGCCAATGTGGATAAAGTGTTGGAGGCTTTGGCTGATTCTCTTAAACACTGCCACAAGAGCAGAGTCTGACAACATTCCTCAATGAAAAGTCTCATTGCTGACACAACATCATCAGAAAAAAATTTAACTGTACTTTGAAATTGTATGCCATCCAACTTGagtgaataaaaggactaatc
>TCONS_00063907
AGTCTCTCAGTGCACTGGCAGCATTATGTCGTCTCTGTCTGTTCTTCCACCGGAATGTCTGCTAAAGCCTTTCCCTGTTCCTCAACGGCTTATGCTGGGACCAGGACCGTCCAATGTACCTGCACGGATCTCAGCAGCTGGAGCGCAGCCCATGCTGGGACACCTGCACACAGAAACCATTGAGATTATGAATCAGATAAAGAGCGGCATTCAGTATGCGTTTCAAACCAAAAACCGAGTGACTCTTGCCGTGAGTGGACCGGGTCATGCTGCGATGGAGTGTGCCATCTTTAACTCCCTGGAGCCTGGAGACAAAATCCTCATAGCAGTCAATGGCATATGGGGAGAGAGAGCTTCAGAGATTGCGGAGAGGATAGGTGCCAAGGTGAACACAGTTGAAACCATGGCTGGGGGGTATTTAACAAATGAGGAAATTGAGAAGGCATTAAACAAATACAGGCCAGCAGTGTTCTTCCTCACACATGGAGAATCGTCCACAGGAGTGGTTCACCCCATAGATGGCATAGGCCCACTTTGCCGCAAGTGAGAACTAATCTCGTTATGAACTACACtgagatttaaattaaaaatcatcaaaatctttctttttttcccctaatttatTATGAGGTAGCCATATACTTTACCCATATTAAAATTCACCTTTGTCTAATTTATTCTTGCTCTTTTTggtgaaacagaaaaaaaaaaaaaaaagattgttgacATGTTGAACTGAAGAGATGTGTCCAATTGAATAATGTCTAGAGTGGGAATGTACTTCACACATTACCTTATGCCATGACAAAGAAAGAGATCATTAACTAAAGCAAAGATAGAAACGAGACTGAAAAATGAACTGAAgaaaccttcattcattcatcacagTCCCTTTcctaatctggggttgccaaa

Function

symbol description
agxta Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Predicted to be involved in glycine biosynthetic process, by transamination of glyoxylate. Predicted to be active in peroxisome. Is expressed in liver and pronephric duct. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0005777 peroxisome cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0008483 transaminase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-16 Predicted to enable alanine-glyoxylate transaminase activity and serine-pyruvate transaminase activity. Predicted to be involved in glycine biosynthetic process, by transamination of glyoxylate. Predicted to be active in peroxisome. Is expressed in liver and pronephric duct. Human ortholog(s) of this gene implicated in primary hyperoxaluria type 1. Orthologous to human AGXT (alanine--glyoxylate and serine--pyruvate aminotransferase).

Ensembl:

ensembl_id ENSDARG00000052099

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063905 False 1394 mRNA 0.46 11 27112884 27123327
TCONS_00063906 False 672 lncRNA 0.42 4 27112891 27115633
TCONS_00063907 True 915 lncRNA 0.43 4 27116890 27123251

Neighbor

gene id symbol gene type direction distance location
XLOC_032883 dtymk coding downstream 4040 27104962 ~ 27108844 (-)
XLOC_032882 stk25a coding downstream 55182 27041594 ~ 27057702 (-)
XLOC_032881 NA coding downstream 74513 27035652 ~ 27038371 (-)
XLOC_032880 hdlbpa coding downstream 217134 26874839 ~ 26895750 (-)
XLOC_032879 NA coding downstream 286960 26824950 ~ 26825924 (-)
XLOC_032885 zgc:103559 coding upstream 3293 27126620 ~ 27139396 (-)
XLOC_032886 NA coding upstream 367410 27490737 ~ 27491747 (-)
XLOC_032887 NA coding upstream 497348 27620675 ~ 27623521 (-)
XLOC_032888 AL935299.1 coding upstream 572996 27696323 ~ 27727397 (-)
XLOC_032889 im:7152348 coding upstream 761045 27884372 ~ 27891961 (-)
XLOC_032878 NA non-coding downstream 437941 26561981 ~ 26674943 (-)
XLOC_032876 NA non-coding downstream 803037 26290783 ~ 26309847 (-)
XLOC_032872 NA non-coding downstream 1844576 25267951 ~ 25268308 (-)
XLOC_032890 NA non-coding upstream 815162 27938489 ~ 27954601 (-)
XLOC_032892 NA non-coding upstream 1001054 28124381 ~ 28130130 (-)
XLOC_032898 NA non-coding upstream 1860690 28984017 ~ 28986397 (-)

Expression


Co-expression Network