G1386254 (LOC106566883)


Basic Information

Item Value
gene id G1386254
gene name LOC106566883
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 51560153 ~ 51560878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1583221
CGTATCTCCATATGGCTTTGGTGGTTTGACAGTCTCCCCTAGACTGACGCTGGCCTTGGTGGTGCTCAGCCTTCTGGGGTGAGGGGTGGTCACCACTGCGAACGTCCTCTGGGGGctcttggtagtggtggtggtggtggtggccatGGCAGTGGTCAAGGCCTTGGTGGACAGCGTGGAGTTGGCCGCCGTTTTACCCTCACCGTTCTCAAAGTTGTCCTCTGTCCCCGTGGGTCCCCAGTCGATATATCCAGCCACCGTCGTGGTCCTGCCGTCCTGCGATTTGTCATCGCTGTCCCATTTCAGCTGCCTCCTCGCCCTCAGTAACAACCTCACCACGTCTGTTTTGTGCCCCATGGGAAGATCTAGCACCGCTGCTAAATCCCCCACCTCGGTGGATGTGTATTTCAACCAGCACTCCTTACATGGCTGTCCTTTATGTGCCAGTCTCCTGTGCTTTTGACCCCTGAACTTTGGCCCTGGCCCTCCCATATTGGCTGGCGGTGGGACGGGGTTGAGGAGCCGGCGCGCCAGCGGCCTCACTGTCCTCCAATGGAGCATGTTGGGAGTATCCCAGAGGGGCGCCGAGCGGGGCCGGGGACGAGGCACAGGTTTGGGGATGAGCTTGATTCCTAGGCCCTGACTGAGGGGGCTACACAGGGAAAAATCCAGGGTGAGGTGGGTCATGGCCAGGAGGATCCACACCCGAAGCCCTACACAGCTCCC

Function

NR:

description
adherens junction-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1583221 True 726 TUCP 0.60 1 51560153 51560878

Neighbor

gene id symbol gene type direction distance location
nphp4 nphp4 coding upstream 249314 51118978 ~ 51310839 (+)
c16h1orf174 LOC106566886 coding upstream 446686 51110108 ~ 51113467 (+)
LOC118939554 NA coding upstream 465661 51088101 ~ 51094492 (+)
LOC110492909 NA coding upstream 620439 50938724 ~ 50939714 (+)
LOC110492210 LOC106566890 coding upstream 763958 50490237 ~ 50796195 (+)
cfap74 cfap74 coding downstream 176717 51737595 ~ 51787114 (+)
LOC110492222 LOC106566880 coding downstream 242183 51803061 ~ 51862196 (+)
nadka nadk coding downstream 314262 51875140 ~ 51915893 (+)
LOC110492224 NA coding downstream 355248 51916126 ~ 51920772 (+)
LOC110492227 LOC106566879 coding downstream 363629 51924507 ~ 51963750 (+)
G1386253 NA non-coding upstream 2734 51557192 ~ 51557419 (+)
G1386250 NA non-coding upstream 6470 51553463 ~ 51553683 (+)
G1386247 NA non-coding upstream 10741 51549065 ~ 51549412 (+)
G1386245 NA non-coding upstream 13774 51546148 ~ 51546379 (+)
G1386240 NA non-coding upstream 17241 51542615 ~ 51542912 (+)
G1386267 NA non-coding downstream 19413 51580291 ~ 51580584 (+)
G1386279 NA non-coding downstream 32452 51593330 ~ 51593558 (+)
G1386286 NA non-coding downstream 42202 51603080 ~ 51603964 (+)
G1386388 NA non-coding downstream 87205 51648083 ~ 51648285 (+)
G1386389 NA non-coding downstream 87952 51648830 ~ 51649038 (+)
G1386227 ajap1 other upstream 33340 51526013 ~ 51526813 (+)
G1384247 NA other upstream 987103 50572692 ~ 50573050 (+)
LOC110492182 LOC106566913 other upstream 2310278 49202107 ~ 49258042 (+)
G1386998 NA other downstream 721315 52282193 ~ 52286457 (+)
G1387286 NA other downstream 1230060 52790938 ~ 52791289 (+)
G1387575 NA other downstream 1760903 53321781 ~ 53326591 (+)
LOC110492303 LOC106566801 other downstream 2485137 54045935 ~ 54061849 (+)

Expression


Co-expression Network