XLOC_032890


Basic Information

Item Value
gene id XLOC_032890
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 27938489 ~ 27954601 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063913
CAAAAGTTGAAGAAGGAAAGCCGACTCACCTTTTACCATTAAAGAGTGTAATTACCATTTGACTGGGCAGGAGGAAATGGGGCTCCATACCCAGAGGCTCTGTTCATCTGGCCCAGCCAAAACCACATAAAGCCAGAAGGGGAACAGGAGAAGGAGCGTAATGGTGGTGCATGGAGGGACTCCAGCGGGCCGTCGTTTTACTGTTACCTGAGAGCGCAGCTCACTCCTCCTGCCATTCAGGACAATGAGCTGCCAAACACACAAAGACGGCGGGAGGAAATGGCtgggaaaaaaaagaacagaagaGGAGAGAGAAACATGAGTTGGAATGAGAAAGTCATGTTCAGTCCAGCTCGCTGAAAGACTTTCATCTAGACTACAACATAAACCAAGAAGACAACACCAAgatttattgtgctcaaattgcGAAAGAGTTCAGGGAGCATGAGACATGGATTGGTCAACACAGAGTCCAGATCTTAACCCTATTGAGAatctttgggatgtgctggagaGGACTTTGCACAACAGTCAGACTCTTCCATCATCAATGCAATATCTTTGGACCTTtggatttgtttttatatacaaatatacattttaaaatatcttgcATCAACAGAATAAACTGTTACAATGTCCCAAactaaaatgtataacaaaactgTAGGACAGAATTCACAAACTCAATAAATTTAGTTGCAGGTCGTGTGACAAGCCACAATCACTCATACACCATGCAAACAAGTTGGCATGTGGAGAAAATGGTCAGTTGTTTACACATCGCACTTTGAATGCCTTGTGGAGCCAAGTCTACACCACAGGCCCAAATAAGAACAAATCTAGATCACCCATTTTCACACACTCTACAGCAAATCCACAAATTTACCCCACCACATCTTTAGAGAGGACTTCAAAACCAAAACATTTCTCGAGTTTGCGTCAATCCACCAAGTAAGAATGTAAACAGGCATTCCCTGCTGCAAAAGCCCCTATCTTCAGTACAGCAAGAGGAATCAGACCCCTGTAAGTACAACAGGCCTCGGTTATGACCCTCTAAAGTTGGCACACCCTCTCCTTTGCACATTTCACATTCCTCAAACACAATCACACTTCCCCTCCACCTCTAGAGTTCTAGGAAAACAGCAAACGAGAATCCAGCACAATCAACAGCTCAAAGGAATGTCAGCTTATGTTGGCAGATCCAGATAAGAAGCACTAAGCTGCTACAGCATAATAATATAAACCATTAGGAGGGAAAATGGGTCTATTTTGTTGCTTTTTAACAGGAAAAAACTGTGAAGAAAAACAGTGAAATGCATTCATATGTAGAAGATTAAAATCACTTCAAGGCCATTTAGCTATTGTGGTAGAGGAATTTAGGAATGATGAATATTCCACATCCACGcaacacaccaacacacaaatactgtatttttcaGCTGCCAAAGAGAATTACCATTTCTGATCATATTTCTCAAATCTTTCATGACCCACACAATATTCGGATGAActctaccagtcaaaagtttggcgTCAGTacgattttttaaatattttacaataagattatcctgctcaccaagacttttttttaccaaaaatgcaataaaaatagcttataatttaattataatgtaataatttattccagtgattttaacagtgatttttttatCTTCATTACTGCAgccttcagagtcacatgatccttc

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063913 True 1715 lncRNA 0.40 2 27938489 27954601

Neighbor

gene id symbol gene type direction distance location
XLOC_032889 im:7152348 coding downstream 46528 27884372 ~ 27891961 (-)
XLOC_032888 AL935299.1 coding downstream 211092 27696323 ~ 27727397 (-)
XLOC_032887 NA coding downstream 314968 27620675 ~ 27623521 (-)
XLOC_032886 NA coding downstream 446742 27490737 ~ 27491747 (-)
XLOC_032885 zgc:103559 coding downstream 799093 27126620 ~ 27139396 (-)
XLOC_032891 si:ch73-194h10.3 coding upstream 160782 28115383 ~ 28117995 (-)
XLOC_032892 NA coding upstream 169780 28124381 ~ 28130130 (-)
XLOC_032893 bcl6aa coding upstream 261886 28216487 ~ 28222592 (-)
XLOC_032894 si:busm1-105l16.2 coding upstream 385061 28339662 ~ 28345002 (-)
XLOC_032895 tbc1d23 coding upstream 959632 28914233 ~ 28943056 (-)
XLOC_032881 NA non-coding downstream 900118 27035652 ~ 27038371 (-)
XLOC_032879 NA non-coding downstream 1112565 26824950 ~ 26825924 (-)
XLOC_032878 NA non-coding downstream 1263546 26561981 ~ 26674943 (-)
XLOC_032898 NA non-coding upstream 1029416 28984017 ~ 28986397 (-)
XLOC_032908 NA non-coding upstream 1455625 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 1703300 29657901 ~ 29659956 (-)
XLOC_032911 NA non-coding upstream 1796359 29750960 ~ 29752357 (-)

Expression


Co-expression Network