XLOC_032895 (tbc1d23)


Basic Information

Item Value
gene id XLOC_032895
gene name tbc1d23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28914233 ~ 28943056 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063917
AGCGACAGGACGTTGGTATTTACGACACATTTTGACGTGGACGTCACCACAGCAATGGCGGATGCTGTAGGGGAAGTGCTTGAAGGCAGCTGGAATCAGGATTTGGCTGATGCTCTTGACTCTGCAGTATGTGATCTGAACAGTGACCAGGATGGTGTCATCCAGGTTCGAGACCTTTCCCCACCACAGCGGGCCAAATTATGGATGATTGCTCTGAATGTGTCTGGTAAAGGAGATAGTCTGTCCTCATGGGATGGCGTTTTAGATCTACCAGAACAGACGCTCATTCACAGCCGCAGTCAGCAGCTCACTGATGAGCTGGGCATACCAGTGGAGGAAGGACGGGACCTGGTATCAGATGTGGAGTCAGTTATCACcttttactgcaagtccagaaaTGTTACATTCACTCCAGATCTCAGTTGGCCACACATCCTCAAACCACTCCTGGGCTTACAGCTGTCCCGCAAAGACCTCTACAACTGCTTCTATGCCATCATGAATAAATATATTCCAAGAGACTGCATTGTAAAGGGGCGGCCATTTCATCTGTTTCGACTCCTGCTTCAGTACCACGAGCCAGAATTCTGCTCCTTCCTGGACACTAAAAAGATCACTCCTGATTCCTATGCCATAAACTGGCTTGGGAGTCTTTTTTCGAGCCACTGTTTACCTGAAGTCACACAGGCCTTGTGGGATGTTTATCTCCAGCAGGCCGACCCTTTTCTTATCTTCTTCCTTATGCTCATCATCCTAGTCAATGCCAAAGATAACATCCTTATCCAAGAAGGAGACAACAAAGAGGAGATAATCAAAATGCTGGAGCAGTCGCCGTCATTACTAGAGGCAGAGGACATTGAAGACTTGTTCTCTTTAGCGCAGTATTACAACAGCAAGACGCCTCTATCTCTTAGAAAGGAGAACCATAATCTGTTTGGCAGTAGTCTGGTAGCCCTTAAGGAAGAAGACATGGACCTGAGTCAGGCACTCTGTCTGCCTGTGTCAGTCCCTGAGATCCTGCAAGCCAACCAGCTACAACCTGAGGGTGTCAGATTTTTTGTGGTTGATTGTCGTCCTGCCGAGCAGTACAATGCTGGTCACCTCTCTACTGCCTTTCACCTGGACTCTGACCTGATGCTTCATAACCCCTCAGAGTTTGCCCTGTCCGTCAAGTCTCTTCTGGAGGCACAGAAGCAGTCTTTGGAGTCTGGCTCTGTGGCCAGTGGAGAGCATTTGTGCTTTATGGGCAGTGGACGTGAAGAGGAGGACATGTACATGAACATGGTGCTTGCCCACTTTCTGCAGaaaaacaAAGAGTTTGTGAGTATTGCAAAAGGTGGATTTATGGCATTGCAGCAGCACCTGGCAGATATTAATGTTGAAGGGCCAGATAACGTTTATGTTCACTGGATTGTGAGTACCTCAGGATCCCACAGCAGCCTCAGCTCAGCAGATGGAGAACTGAACAGCACAGATGGCAAAGGAGTTAAATCACTTGTCAACAAAATGACATTTGCACTCAAGTCAAAGTCAGTCAATGTGAAAGAGAAGGTGATCAGCTTCATTGAAAACACTTCCACACCAGTAGAAAGgcaTGTAAGTAGCAGTGATCGAGTGGGGAAACCATACAGGGGTGTCAAGCCTGTCTTCAGCATTGGAGATGAGGAAGAGTATGATACAGATGAGATTGATAGTTCATCCATATCAGATGATGACAGGAAAGAGATTGTTAATATTCAGACTTGGATCAACAAACCAGATGTAAAGCACCACATTCCTTGCAATGAGGTTAAGGAGACTGGCCACATGTTTCCAAGTCATCTGCTGATCACCGCAACACACATGTACTGTTTGAGAGAGATCGCTGCTCGGAAGGGTTTTGCTTACATCCAGTCCAGACAGGCACTAAACTCTGTTGTGAAGATCACCTCCAAGAAGAAACATCCAGAGCTAATCACATTTAAATTTGGCAACAACAATGCTGCAGGAGTGGAGATTGTGGCTGTGGAGAGGTATTTAATTCCAAATGCCGGCGATGCCACTAAAGTCATCAAACAGCAAATCATGAAAGTGTTGGATGCTCTGGAGAGCTCTTAGAAACATGAGCGGCACTTCGGTCTGGTCCTCCAGGAGTCCACCGTGTCTCCAACAGAAACAGCCTGCAGGGGAAGGAGGAAGTAAAGCATTCCTACACTGTTTTTGGTCATCATCTCCTCCATGGGCAGCACTGATGTGGAGGTCTGTCAGGACTCTTTGAGCTCATCACCAACATGACTGATAGGAGCTCTCAAACTTTGGCTGTGAGCCTTCAATAGAAATGGTTTGGTTCATTTTTGCTTTGTGATTTCATTTTCTTGAAACTGACCTAAAGCAAGTTAGATTTGTTATGTCTCTTTTTCCGTCTCAAGCCTTAATGATGCTTTTTATATGAGTCTCAAACAGGCCCCCTGGGtgagaaaaaaaatggttttggaACCTCAAGCAAGGAACCTGCATCAATTATTGAGGTCACTAATTGTTTTGCCATCATATATTGCTGCATACTCATGTAACATATTTATCAAAGCAGTGTTTGTTTTTACACAAAGCAAATTCATCGGGAGCCTTGTCAACAGGCATCGAGGTGAACATATGTAAatgcttcatatatatatatttctttttggAAAGGATGCAACCCTTCAGGATGTTGCTTTGCACAAGAGGCTGCACAAGCGTGATGCATAGACTTCcatttaactctgctgctgactCACTAAAATGCCCAGAAATGGTTATAAGCTCTTGTTGGAGCACCTGTCACTTTTAGGTTCCATCAAGTTGTTGCAGCATTAAAAGATTAAAGGGAACGCGTTGATCAGACAGTGACCGTAAAAAGGACCTTATCCAACTTGCGGGCAAGTACCAGAGAATGTATTGTGAAAGAGAAGCTGGAGAGTAAAATGAGGTGGAACGGCTTCTATTGAAAGTAAATTGagtattccaaaaaaaaaagtgtccatCAAAAATAAATGCACAGTATCAAATGATCTATACACAAGAGGTTGCAGGAGTGAAAAGGGAGCGTGTTTGGAACATTTTTGGTATTCGGTTGATCACGCTGTTCTCAAATTGCAAatgaaaatagtatttatttaaaacaccCTGTACATTACTAAGAGGTTCAGAAGACCATGCCTAACGACACAATCTCccatttaaatgaatcaaatgaGGTCCACCGTGTCTGACTGTTTCAATAAAATCTGTTGATTgatataaatgtacaaaaaa

Function

symbol description
tbc1d23 Involved in embryonic brain development. Acts upstream of or within brain development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Is expressed in head. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TBC1D23 (TBC1 domain family member 23).

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:1990403 embryonic brain development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007420 brain development biological_process
GO:0099041 vesicle tethering to Golgi biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0031410 cytoplasmic vesicle cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1253 Involved in embryonic brain development. Acts upstream of or within brain development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Is expressed in head. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TBC1D23 (TBC1 domain family member 23).

Ensembl:

ensembl_id ENSDARG00000044357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063917 True 3273 mRNA 0.44 18 28914233 28943056

Neighbor

gene id symbol gene type direction distance location
XLOC_032894 si:busm1-105l16.2 coding downstream 569231 28339662 ~ 28345002 (-)
XLOC_032893 bcl6aa coding downstream 691641 28216487 ~ 28222592 (-)
XLOC_032892 NA coding downstream 784103 28124381 ~ 28130130 (-)
XLOC_032891 si:ch73-194h10.3 coding downstream 796238 28115383 ~ 28117995 (-)
XLOC_032890 NA coding downstream 959632 27938489 ~ 27954601 (-)
XLOC_032896 tomm70a coding upstream 2985 28946041 ~ 28961660 (-)
XLOC_032897 glmnb coding upstream 27457 28970513 ~ 28980829 (-)
XLOC_032898 NA coding upstream 40961 28984017 ~ 28986397 (-)
XLOC_032899 gfi1ab coding upstream 61006 29004062 ~ 29007493 (-)
XLOC_032900 evi5b coding upstream 68855 29011911 ~ 29086473 (-)
XLOC_032887 NA non-coding downstream 1290712 27620675 ~ 27623521 (-)
XLOC_032886 NA non-coding downstream 1422486 27490737 ~ 27491747 (-)
XLOC_032881 NA non-coding downstream 1875862 27035652 ~ 27038371 (-)
XLOC_032908 NA non-coding upstream 467170 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 714845 29657901 ~ 29659956 (-)
XLOC_032911 NA non-coding upstream 807904 29750960 ~ 29752357 (-)
XLOC_032912 NA non-coding upstream 828311 29771367 ~ 29790125 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014272 tbc1d23 misc CM030128.1 CM030128.1 7464503 ~ 7482560 (+)