G1388265


Basic Information

Item Value
gene id G1388265
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53094545 ~ 53097524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1585534
ATTGACAGGACCAATATTCACAGAAAGAGGCTTTCATGAAAAATAGGTAGACCTTTTTGgaaatgaaaaatattaatatttcAATTAATaaattatTATGGATAGGAAGCCATAATACTGTAGTACAGCAACGTGCTGACAGATTACTCAACTCTGAAGCCAAAGAATCCTCTATTTGAATGAAAACGTGTTCTATTTAAAGGTCCAATGGAgccatttttatatcaatatcaaatcctttctgggtaacaattaagtaccttactgtgattgttttcaattaaaattgtaaaaaataaacaaaaatagcttcttagcaaagagcaatatTTCAAGCAATAATTTAGCTTGGATTGTCCGGGAGTTGTGGGGCCTAATTGGAGGAGCCTAATAGGAGGGATAtgtaacctgaaaactagctgttattggaagAGAGGTTTAcaactctttgttattggtctaatAACTTATAACACCTGGTAATGTCGCCAGGcagaccaaaactccatcccactaaaacaggcagaaatttcaggtggtcttttcaaacagctcttacactaaaagtgcattatgataattttcacaatttcacagtattattccaacctcatagtgtggaaaaataaatataaaacacagaaaatcacatttttgactgcactgggcctttaacataTTTGTCACTATATTCACGTTCTTTGTGGCTTTACATGGCttctttgtcttttcttagcTATAGAGTTTGAATCCAGAAATGTCTACCTGTCTCGTTTCTGGAATATTATTTGTAATAAAACAAAAGTCACTCAAACAAAACAATGTAACGCTCGGTACCATATTCCTTCTAGAGTATGTCTGTGACCTGATTCAAGAGTGACATGAGTAAATTAACATTTTTAAAGGGAGTTACGGGTGAATAACAAACCCATTTCATTCAGTAACTATACAATTATTTTGTTCCCAAAACTATTCATTGGTGTCAGCCATCTTGGCCTTTTAGAGAGGCCTTTCCACTCCCTACTGCGTCTaaccagtcagccaatcagagtGGCTTATATGCAAGCCACAATGGTTGGCTTCAGCAGGAAATTCCACTGTAGCTTAGTGCAGGTCACAACCCTTCGCAGAAGGAATACTGTGCATTTAGCGGTTCTTTGTCTTGCTGTTTTTTGGGCTTGTGTGTTTGTCATTGAGCTACGTTGACTCTATCTGTGTTTTTTCTTTGTACTTGTAGATGTGTTTGTGTTAGTTTAAATTGATATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1585534 True 1267 lncRNA 0.36 2 53094545 53097524

Neighbor

gene id symbol gene type direction distance location
LOC110492271 ccd22 coding downstream 51070 53036097 ~ 53043475 (-)
LOC110492270 LOC100380632 coding downstream 96893 52963457 ~ 52997652 (-)
LOC110492269 LOC106566831 coding downstream 132605 52950656 ~ 52961940 (-)
LOC110492268 LOC106566834 coding downstream 156856 52933104 ~ 52937689 (-)
LOC110492267 LOC107599000 coding downstream 162855 52923535 ~ 52931690 (-)
LOC110492274 LOC106566829 coding upstream 357 53097881 ~ 53146173 (-)
foxp3-2 foxp3-2 coding upstream 67980 53165504 ~ 53181656 (-)
LOC110492276 LOC106566827 coding upstream 108747 53206271 ~ 53211578 (-)
LOC110492279 LOC106566931 coding upstream 115808 53213332 ~ 53217735 (-)
LOC110492277 LOC106566826 coding upstream 121849 53219373 ~ 53226719 (-)
G1388249 NA non-coding downstream 21235 53073102 ~ 53073310 (-)
G1388220 NA non-coding downstream 21741 53072571 ~ 53072804 (-)
G1388238 NA non-coding downstream 60850 53033482 ~ 53033695 (-)
G1388234 NA non-coding downstream 62828 53031430 ~ 53031717 (-)
G1388173 NA non-coding downstream 178054 52916182 ~ 52916491 (-)
G1388328 NA non-coding upstream 120930 53218454 ~ 53218762 (-)
G1388333 NA non-coding upstream 129632 53227156 ~ 53227471 (-)
G1388351 NA non-coding upstream 157205 53254729 ~ 53254985 (-)
G1388352 NA non-coding upstream 157566 53255090 ~ 53255300 (-)
G1388354 LOC106566824 non-coding upstream 158895 53256419 ~ 53257688 (-)
G1388236 NA other downstream 61624 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 522238 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 665786 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1104550 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 1979480 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 632813 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1447204 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1887294 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2726635 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2966979 56064503 ~ 56064862 (-)

Expression


Co-expression Network