XLOC_032897 (glmnb)


Basic Information

Item Value
gene id XLOC_032897
gene name glmnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28970513 ~ 28980829 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063919
CAGATCTTCCGCAGAAAAGCCTAGTTTATAATCCTGACCTTGAAGTGTTGTTTGTATGGATTATTTTTGAAAAGACCAGATCTGACAATGGCAGTGAATCAACTAGAAGATGTAATTCAAAAATGGAGAACAATTGAAGAGTTTAAACCAGAAGACCATGAACTCTTTCTAAATGCTGGCCATACTTGCATTGCCCAAGGTGATGGCACTCTACTACTGAACTTCATAAAAGACGAGGCAAATAAGCACATAGTGAGGTCTATGGGCGGTGGTCTAGTGCCTGCACTGGTGAGTGAAGTGCTGAGAAATGGCCGCAGTGCTGTTCACTGTCAGGCTATCCTCAGTGAACTAGTACAGaTCTGCAGAGTGAAAGAAGTACTCAATACTTTACTTCAACAAGTGGATGATGCTGATCCGAATGCAATTGCGGACTCTATCATTGTTCTCATGCCTCCTATTCAGTCAGTTCTATTGAGAATGAGCGAGTTGAAGGCCCCTGGATTGTCTATGGCCCTTGATTCACTTCAGAAACAGATTTCAAAGTTGCCTGTACCATACTCAAACAAACAGGAACAGGAAGATGTGTATGGGCTCTGCCGATGCTGCACTGCAGTACTGACCTTTATACAACCCTTCGTGCAGGAAGTCAAGAATCAAGACACAAACTCAGAGGCCACTAGTTTAAGAGCTGCTCTTCTAAAGTTTTGCATGAACAGTCTAAGGGAACCCCTCCTCCAAGCTCAACTGGACAGAGAGGGCAACAAAACAGAAATTTTGCCACTGTGGAATTTTGCAGCAGAAATAATGGCAATCCTAGTAGTGATCCAAGAATCTCTACCAAAAATCCTGTTCTACCATCCTGTGAGGGGAAAAGAGGACGACATACTAGAGAAACAAGCCTGCCATCCAAATGAATCAAAAGCTTGCATTGCTTACTTGCTGTTTGTCCAACTTATTGCCATAGATGTTTTCCCTGCAGTTTTTAGcCCTGTTTTTGTACTCCAGTGTAATATGGAATACATCAATCTTCTGTTGAGTAGAAAAGATGAATCATGGATTTTGAAAGGACTGGACTTACATGTTAAAAGTTTGGAAAGAATAACAGCCTGCAGTCTCCCAGTGGAGCTCTTAGACCTGAAACCATTCCATGAGGTTCCGCAGAGCTTAATTAAAATTATGATTGAATGTCCTATCCAGCATTTGAGAGGAAGAAGCCTTGTGGTGTTCCAGCTCTTTATAGAGAAGCTTAATGGTGAAGCAAAGCACAAATTTTTCAGGCGCATAATAAAAACTAGCCATCATGCAGGTGTAGAAAGTACCATcctcaaaaacataaaaaatcaaGTGGAACAAACCAGAAAGTCAGTCTACCAAGATGGCTGGTTTGAGGGGACTCGGCTTATCTCACTGCTCAGAGACACTATCTGTCTCCCACAGGGCCACGAAACTGACTTGCTACATGGAATGGACAGggtCATGGAGTCTCTAAATCTTCTGCGGTATTTACTGATACAGAAAAGAGGAATTTCTACTGGAGAGTGGACAGACCTGTGCCATATTGCTGAGACGTACACAAAATTACTACGTGTTTGTCTAAGCATGTCAAAATCATACTATGGAACTGAGTTAAAAAGACTTCGAGAAAACAAAAAGATTAAGGCTAAAGAATTCAAAGAGGCATCTGGAAAGAGATCAGTTCAGAGCTTGATTGTGAAAACGGAGACGCTTGGTAGCATGCCACCTGAGGCACAGGATAAGGTCTTGCAGTGCGCCCTGGTCACATGTGACTTAATGGAAAGTCTTGTAGTCCGGATTGAAGAGATCATTGAGGAGAGTCAAAAATGAAGTACTGCGCACATTTACTGCAA
>TCONS_00063920
CTAAGGCGCATAATAAAAACTAGCCATCATGCAGGTGTAGAAAGTACCATcctcaaaaacataaaaaatcaaGTGGAACAAACCAGAAAGTCAGTCTACCAAGATGGCTGGTTTGAGGGGACTCGGCTTATCTCACTGCTCAGAGACACTATCTGTCTCCCACAGGGCCACGAAACTGACTTGCTACATGGAATGGACAGggtCATGGAGTCTCTAAATCTTCTGCGGTATTTACTGATACAGAAAAGAGGAATTTCTACTGGAGAGTGGACAGACCTGTGCCATATTGCTGAGACGTACACAAAATTACTACGTGTTTGTCTAAGCATGTCAAAATCATACTATGGAACTGAGTTAAAAAGACTTCGAGAAAACAAAAAGATTAAGGCTAAAGAATTCAAAGAGGCATCTGGAAAGAGATCAGTTCAGAGCTTGATTGTGAAAACGGAGACGCTTGGTAGCATGCCACCTGAGGCACAGGATAAGGTCTTGCAGTGCGCCCTGGTCACATGTGACTTAATGGAAAGTCTTGTAGTCCG
>TCONS_00063921
AAACACCCTGATCTCTGTTATAAAGCTAGCTATATTCTTTTGTgctgatttgttttatattgcAGATGTCATTCAGATCTTCCGCAGAAAAGCCTAGTTTATAATCCTGACCTTGAAGTGTTGTTTGTATGGATTATTTTTGAAAAGACCAGATCTGACAATGGCAGTGAATCAACTAGAAGATGTAATTCAAAAATGGAGAACAATTGAAGAGTTTAAACCAGAAGACCATGAACTCTTTCTAAATGCTGGCCATACTTGCATTGCCCAAGGTGATGGCACTCTACTACTGAACTTCATAAAAGACGAGGCAAATAAGCACATAGTGAGGTCTATGGGCGGTGGTCTAGTGCCTGCACTGGTGAGTGAAGTGCTGAGAAATGGCCGCAGTGCTGTTCACTGTCAGGCTATCCTCAGTGAACTAGTACAGaTCTGCAGAGTGAAAGAAGTACTCAATACTTTACTTCAACAAGTGGATGATGCTGATCCGAATGCAATTGCGGACTCTATCATTGTTCTCATGCCTCCTATTCAGTCAGTTCTATTGAGAATGAGCGAGTTGAAGGCCCCTGGATTGTCTATGGCCCTTGATTCACTTCAGAAACAGATTTCAAAGTTGCCTGTACCATACTCAAACAAACAGGAACAGGAAGATGTGTATGGGCTCTGCCGATGCTGCACTGCAGTACTGACCTTTATACAACCCTTCGTGCAGGAAGTCAAGAATCAAGACACAAACTCAGAGGCCACTAGTTTAAGAGCTGCTCTTCTAAAGTTGTATGTTTTTACTAATGTGTATGTGACAATACACATTGTTTTAAGAATTTTACTGAGATAATCAAACTGGTACATCTGTAAAGCAAGTTTTAAAGCTGGACAATTTGACAGTATGCCATCTTTCGACTTTAGCTGTACTCATATTGTTAACTTTAACTGTATTcatattagaaaataaattagtGCAGCAGGTTCTTAAGA

Function

symbol description
glmnb Predicted to enable ubiquitin-protein transferase inhibitor activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0055105 ubiquitin-protein transferase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-14 Predicted to enable ubiquitin-protein transferase inhibitor activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein).

Ensembl:

ensembl_id ENSDARG00000010958

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063919 False 1868 mRNA 0.42 18 28970513 28980756
TCONS_00063920 False 539 lncRNA 0.43 6 28970570 28972021
TCONS_00063921 True 978 lncRNA 0.39 5 28975158 28980829

Neighbor

gene id symbol gene type direction distance location
XLOC_032896 tomm70a coding downstream 8853 28946041 ~ 28961660 (-)
XLOC_032895 tbc1d23 coding downstream 27457 28914233 ~ 28943056 (-)
XLOC_032894 si:busm1-105l16.2 coding downstream 625511 28339662 ~ 28345002 (-)
XLOC_032893 bcl6aa coding downstream 747921 28216487 ~ 28222592 (-)
XLOC_032892 NA coding downstream 840383 28124381 ~ 28130130 (-)
XLOC_032898 NA coding upstream 3188 28984017 ~ 28986397 (-)
XLOC_032899 gfi1ab coding upstream 23233 29004062 ~ 29007493 (-)
XLOC_032900 evi5b coding upstream 31082 29011911 ~ 29086473 (-)
XLOC_032901 dipk1ab coding upstream 122113 29102942 ~ 29143463 (-)
XLOC_032902 zbtb11 coding upstream 163947 29144776 ~ 29159888 (-)
XLOC_032890 NA non-coding downstream 1015912 27938489 ~ 27954601 (-)
XLOC_032887 NA non-coding downstream 1346992 27620675 ~ 27623521 (-)
XLOC_032886 NA non-coding downstream 1478766 27490737 ~ 27491747 (-)
XLOC_032881 NA non-coding downstream 1932142 27035652 ~ 27038371 (-)
XLOC_032908 NA non-coding upstream 429397 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 677072 29657901 ~ 29659956 (-)
XLOC_032911 NA non-coding upstream 770131 29750960 ~ 29752357 (-)
XLOC_032912 NA non-coding upstream 790538 29771367 ~ 29790125 (-)

Expression


Co-expression Network