XLOC_032898


Basic Information

Item Value
gene id XLOC_032898
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 28984017 ~ 28986397 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065164
tggttttttaacccaaatgctgggttgagactgctgggtaacaaaattgggttgattcaacccaatttgggttgaaaaTCGATCTTTATCTATAACCCAGCAGTGCTGGGTTGGGAACGCGGACGTGAAAGAGAGCACGCACGTCACGTCAACATGCAGGGACATCAACGTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAGTGTGTTTTTAACAATTTTCATAAGAAATAACACACTTAGTTTACTTAGTATAATATACAcgcgcttttttttctgtttctccgcCTGATGGCCGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacgtgtttctccggacctgtttctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCGCCTAACTCCTGACCTGTGCTCGCCTCACGCCCGACATGTTGCTCCACCTCACGCCCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaataccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgttactgtgatttgtgatctttctggggtgttaactgtaaagcagtaagtagtatttttactattgtatttcttaagtttgttcatggatttttgtgacaatactttgatgcataagtgttgaattcagcttctaacaatgttttttttttatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGCTATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGACTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaaggtatgtaataatattttacttggttcattgtaatcattagggctgcccttgtctaaacatttgtctggttgacttgtgatgttcatttgaagcattagttgaataattacagatttattaataaaccatttattcattaattcattttctttttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacgtggtaaaggtgaattaagtagactaaattgtcaatggtgtatgtgtgtgaatgagtatttgtttcccagtgatgggttgcagctgaaagggcattcgctgcataaaacttatgctggatatgttggtggttcattccattgtggttaccccagattaataaagcgacaaagctaaaaagaaaatgaatgaatgaatgaataataaatttttagttgactaatggttattcaattattagggggcagccctagtaatcattagccacttcaacactttaaactgagagattgaactctaatgccaatttgtttttgtctggttattttttaaaatctgctgttcatgcaaccagtgacattctcttgttttatttttagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCAATGcataatgatgcatttaatgcataatgattgtcttagttattttattaacaatcaaaatgttatttttatgtttgttattagggtggcatgggggcgcagtgggtagtgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065164 True 2381 lncRNA 0.39 1 28984017 28986397

Neighbor

gene id symbol gene type direction distance location
XLOC_032897 glmnb coding downstream 3188 28970513 ~ 28980829 (-)
XLOC_032896 tomm70a coding downstream 22357 28946041 ~ 28961660 (-)
XLOC_032895 tbc1d23 coding downstream 40961 28914233 ~ 28943056 (-)
XLOC_032894 si:busm1-105l16.2 coding downstream 639015 28339662 ~ 28345002 (-)
XLOC_032893 bcl6aa coding downstream 761425 28216487 ~ 28222592 (-)
XLOC_032899 gfi1ab coding upstream 17665 29004062 ~ 29007493 (-)
XLOC_032900 evi5b coding upstream 25514 29011911 ~ 29086473 (-)
XLOC_032901 dipk1ab coding upstream 116545 29102942 ~ 29143463 (-)
XLOC_032902 zbtb11 coding upstream 158379 29144776 ~ 29159888 (-)
XLOC_032903 dpt coding upstream 197740 29184137 ~ 29195642 (-)
XLOC_032892 NA non-coding downstream 853887 28124381 ~ 28130130 (-)
XLOC_032890 NA non-coding downstream 1029416 27938489 ~ 27954601 (-)
XLOC_032887 NA non-coding downstream 1360496 27620675 ~ 27623521 (-)
XLOC_032886 NA non-coding downstream 1492270 27490737 ~ 27491747 (-)
XLOC_032881 NA non-coding downstream 1945646 27035652 ~ 27038371 (-)
XLOC_032908 NA non-coding upstream 423829 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 671504 29657901 ~ 29659956 (-)
XLOC_032911 NA non-coding upstream 764563 29750960 ~ 29752357 (-)
XLOC_032912 NA non-coding upstream 784970 29771367 ~ 29790125 (-)
XLOC_032913 NA non-coding upstream 840057 29826454 ~ 29831187 (-)

Expression


Co-expression Network