G1388421


Basic Information

Item Value
gene id G1388421
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53432268 ~ 53432737 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1585745
CTATTGTAAGCAATGTCGAGGTGAATGGCATAGCTTTACTAGGTAAGCAATTCAACAATTGTTTATTAAGTGATATTTTCTACAGGAATTCCATTCCTTCTGCCATATTTGTTGGGCTTCATCATTTGATGTGAAATGGTGCCGTGTTTGGCTCACTGCACACATATTTAAAGTGACCAATAAAGTAAAGGAGATCTACTTTAAGATTATCCATAGATTCTACCCGTGTAATAGCTTGATTTCTAAATATATACCTGATGTTACCAGTGAATGCAGTTTTTGTGAACTAGAAACTGAATCTATTGAATACTTATTTTGTAATTGCTTACACAGTGAGGTGTTCTGGACTGAGGTGAAACTATATCTGGGCAACAAAAGTTTCACAACCATTGAAATATCTAAGTTTGACATATTATTTTACAACGCTGATTCCACAATTGAATGTTCATACACAAATCAAAATGCACCAT

Function

NR:

description
uncharacterized protein LOC108192163

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1585745 True 470 lncRNA 0.34 1 53432268 53432737

Neighbor

gene id symbol gene type direction distance location
LOC110492286 LOC106566818 coding downstream 55276 53324324 ~ 53376992 (-)
LOC110492285 tpx2 coding downstream 118710 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 134982 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 151683 53263801 ~ 53280585 (-)
LOC110492277 LOC106566826 coding downstream 205549 53219373 ~ 53226719 (-)
LOC110491099 LOC106572329 coding upstream 6255 53438992 ~ 53440261 (-)
LOC110492292 LOC106566814 coding upstream 174673 53607410 ~ 53617096 (-)
LOC110492291 LOC106566813 coding upstream 184796 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 207133 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 245573 53678310 ~ 53681048 (-)
G1388418 NA non-coding downstream 1283 53430755 ~ 53430985 (-)
G1388417 NA non-coding downstream 1742 53429527 ~ 53430526 (-)
G1388416 NA non-coding downstream 2775 53429106 ~ 53429493 (-)
G1388415 NA non-coding downstream 3605 53428123 ~ 53428663 (-)
G1388373 NA non-coding downstream 11876 53420178 ~ 53420392 (-)
G1388423 NA non-coding upstream 2715 53435452 ~ 53436439 (-)
G1388466 LOC106572237 non-coding upstream 61748 53494485 ~ 53497266 (-)
G1388454 NA non-coding upstream 65787 53498524 ~ 53499881 (-)
G1388453 NA non-coding upstream 69029 53501766 ~ 53502137 (-)
G1388481 NA non-coding upstream 85462 53518199 ~ 53519260 (-)
G1388236 NA other downstream 399347 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 859961 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 1003509 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1442273 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2317203 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 297600 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1111991 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1552081 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2391422 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2631766 56064503 ~ 56064862 (-)

Expression


Co-expression Network