G1388423


Basic Information

Item Value
gene id G1388423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53435452 ~ 53436439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1585747
gtcccactaaccgcaaaccagatgggatggcaaatcgttgcaaaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcactgacggtgtcaacagcaaagcatccccacaccatcacacctcctcctctatgcttcagggtgggaaccacacatgcagagatcatccgttcacctactctgcatctcacaaagacacagtggttggaaccaaaaatctcaaattgggactcatcagaccaaaggacagatttccattgtttgtgtttcttggcccaggcaagtctcttcttattggtgtcctttagtcatGGTTTCTTTGTAAAAATGTGATCATGAAGGCCttattcatgcagtctcctctgaacagttaatgttgagatgtgtctgttacttgaaccctgtgaataatttatttcaacttcaatttctgaggctggtaacttgtcctctacagcagaggtaattctgggtcttcctttcctgtggcagtcctcatgagagccagttttattaTAGAGCTtgatttttgtgactgcacttgaagaaacttttaaagttcttgaaattttctggattgactgaccatcatgTTTTAAAGTAAAGATGGATtattctctttgcttttttgagctgttcttaatatggacttggtcttttaccaaataaggctatcttctgtataccacacataccttgtcacaacacaactgattggctcaaatgcattatgaaggaatgaaattccaatttaacaaaggcacacctgttaattgaaatgcattcctcatgaagctggttgagagaatgctcaatgtttctgacttgcctagttaaataaaggttcaataaaaatgccaagagagtgcaaagctgtcatctaggcaaatggtggctactttgaagaatctcaaatataacaaatatttttatttgtttaatacttttttggttactgcatgattccatatgtg

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1585747 True 988 lncRNA 0.39 1 53435452 53436439

Neighbor

gene id symbol gene type direction distance location
LOC110492286 LOC106566818 coding downstream 58460 53324324 ~ 53376992 (-)
LOC110492285 tpx2 coding downstream 121894 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 138166 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 154867 53263801 ~ 53280585 (-)
LOC110492277 LOC106566826 coding downstream 208733 53219373 ~ 53226719 (-)
LOC110491099 LOC106572329 coding upstream 2553 53438992 ~ 53440261 (-)
LOC110492292 LOC106566814 coding upstream 170971 53607410 ~ 53617096 (-)
LOC110492291 LOC106566813 coding upstream 181094 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 203431 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 241871 53678310 ~ 53681048 (-)
G1388421 NA non-coding downstream 2715 53432268 ~ 53432737 (-)
G1388418 NA non-coding downstream 4467 53430755 ~ 53430985 (-)
G1388417 NA non-coding downstream 4926 53429527 ~ 53430526 (-)
G1388416 NA non-coding downstream 5959 53429106 ~ 53429493 (-)
G1388415 NA non-coding downstream 6789 53428123 ~ 53428663 (-)
G1388466 LOC106572237 non-coding upstream 58046 53494485 ~ 53497266 (-)
G1388454 NA non-coding upstream 62085 53498524 ~ 53499881 (-)
G1388453 NA non-coding upstream 65327 53501766 ~ 53502137 (-)
G1388481 NA non-coding upstream 81760 53518199 ~ 53519260 (-)
G1388482 NA non-coding upstream 82910 53519349 ~ 53519871 (-)
G1388236 NA other downstream 402531 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 863145 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 1006693 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1445457 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2320387 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 293898 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1108289 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1548379 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2387720 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2628064 56064503 ~ 56064862 (-)

Expression


Co-expression Network