G1388454


Basic Information

Item Value
gene id G1388454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53498524 ~ 53499881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1585783
tcaaatccaaagtgctggagtatagagccaaaacaacaacaaaaattgtaAAAATGTCCCAATCATTTTGGAACTGCTGAACTgctgaaattgcaccttgtgtaatCTACTTTTCTAACTCTCCACAGTaaattgagaccccgactgagaacCCTAGCAACCATGGGGCGCTACGTGCAGCGCATAGTCTGCAGACAGAGAGTCAAGTGCATCTGATATGTACCAGACAATGACATGcacaatacattacatttatATTATGGTTATTTTGGGCTGTTGGAAGTAGTGTGTTCAAAGGTTTTAAAAAaacgttcaaaacgtattttcaaGAGATTAGAAGTGTAGGTACTGTAGATAGCAAACAGAAATATAATCTCCACAATTTTCTAATTGTCAAAAGAGAGCATTATTCACAAGAACGCTGAGTCTGATGCTTCCAGAAGATGAGTCATTTCATTTTACATCCATAAAGTCTATGGAACTGTATTGTAGTCTACAATTTTTCCATCCACTCCGTTCAGAGTACTGGTCATATTGTTGGAGTCGCTGATACCCTCAGAAAAAGTAAAGTCCTATGAAGTCTGGTCGCAACCTTCTCTTAATAGCCCTTTTAAAGGGCAGTCTTGTTGTTGAGTTTCAGTCTGGGGACTAGTAGAAATCATATCCAACTAATAGACTGTAAACAATATCCTACTACAAACAATGGGAGGGGCTGCAGCTGTGCACTCAACACAGACAGGCTGCAGTTGGAGACTGGACACAGTCTGGACACCGTCGTAGGCTCAGCACTAGAGACAGACTTAACATACGAGGGGGTGGTGGTTGTGGACTGAGCACGGCTGCAAACTGACCAGACTGACCGTACAGTACGGGCTGCAGACTGTTGACTGAACTCAGGGGAGGATGGTCTAGAGAAAGGGGTCTGATGGGGGTGGAGGGTCACAGTCTGACAGGGAGACCAGGCTGGTGGTCCGGTATAGTCTGGTGTCCTTCTCGTCTAGAGGTCAGACCTCCACAGAGGTGATCTGGTTCATCTGGGCCCGCATGGACTGGACACTGTTCAGGATCTTCTTTTGGTGGCCTGCTAGCGT
>TU1585784
ataaaagtgactccaaaataacacaatacattatttaccatagatttctattgggcacaaaataatctgaaacacaaccaaaacaaacagcaaatgcttTAATAAACATATAGGTGAATTTCTCCAAATACTTTTGGTCCTCTAAAAtggggggggactatgtacaaaaagtgctgtaatttctaaacggttcacctgatatTAATGAAAATATCCTCAAAAAAAagttgacagtctgcactttaacctcctaGTTACTgtgtcatttcaaatccaaagtgctggagtatagagccaaaacaacaacaaaaattgtaAAAATGTCCCAATCATTTTGGAACTGCTGAACTgctgaaattgcaccttgtgtaatCTACTTTTCTAACTCTCCACAGTaaattgagaccccgactgagaacCCTAGCAACCATGGGGCGCTACGTGCAGCGCATAGTCTGCAGACAGAGAGTCAAGTGCATCTGATATGTACCAGACAATGACATGcacaatacattacatttatATTATGGTTATTTTGGGCTGTTGGAAGTAGTGTGTTCAAAGGTTTTAAAAAaacgttcaaaacgtattttcaaGAGATTAGAAGTGTAGGTACTGTAGATAGCAAACAGAAATATAATCTCCACAATTTTCTAATTGTCAAAAGAGAGCATTATTCACAAGAACGCTGAGTCTGATGCTTCCAGAAGATGAGTCATTTCATTTTACATCCATAAAGTCTATGGAACTGTATTGTAGTCTACAATTTTTCCATCCACTCCGTTCAGAGTACTGGTCATATTGTTGGAGTCGCTGATACCCTCAGAAAAAGTAAAGTCCTATGAAGTCTGGTCGCAACCTTCTCTTAATAGCCCTTTTAAAGGGCAGTCTTGTTGTTGAGTTTCAGTCTGGGGACTAGTAGAAATCATATCCAACTAATAGACTGTAAACAATATCCTACTACAAACAATGGGAGGGGCTGCAGCTGTGCACTCAACACAGACAGGCTGCAGTTGGAGACTGGACACAGTCTGGACACCGTCGTAGGCTCAGCACTAGAGACAGACTTAACATACGAGGGGGTGGTGGTTGTGGACTGAGCACGGCTGCAAACTGACCAGACTGACCGTACAGTACGGGCTGCAGACTGTTGACTGAACTCAGGGGAGGATGGTCTAGAGAAAGGGGTCTGATGGGGGTGGAGGGTCACAGTCTGACAGGGAGACCAGGCTGGTGGTCCGGTATAGTCTGGTGTCCTTCTCGTCTAGAGGTCAGACCTCCACAGAGGTGATCTGGTTCATCTGGGCCCGCATGGACTGGACACTGTTCAGGATCTTCTTTTGGTGGCCTGCTAGCGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1585783 False 1091 lncRNA 0.45 1 53498524 53499614
TU1585784 True 1358 lncRNA 0.42 1 53498524 53499881

Neighbor

gene id symbol gene type direction distance location
LOC110491099 LOC106572329 coding downstream 58263 53438992 ~ 53440261 (-)
LOC110492286 LOC106566818 coding downstream 121532 53324324 ~ 53376992 (-)
LOC110492285 tpx2 coding downstream 184966 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 201238 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 217939 53263801 ~ 53280585 (-)
LOC110492292 LOC106566814 coding upstream 107529 53607410 ~ 53617096 (-)
LOC110492291 LOC106566813 coding upstream 117652 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 139989 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 178429 53678310 ~ 53681048 (-)
LOC110492296 LOC106566808 coding upstream 189291 53689172 ~ 53695764 (-)
G1388466 LOC106572237 non-coding downstream 1258 53494485 ~ 53497266 (-)
G1388423 NA non-coding downstream 62085 53435452 ~ 53436439 (-)
G1388421 NA non-coding downstream 65787 53432268 ~ 53432737 (-)
G1388418 NA non-coding downstream 67539 53430755 ~ 53430985 (-)
G1388417 NA non-coding downstream 67998 53429527 ~ 53430526 (-)
G1388453 NA non-coding upstream 1885 53501766 ~ 53502137 (-)
G1388481 NA non-coding upstream 18318 53518199 ~ 53519260 (-)
G1388482 NA non-coding upstream 19468 53519349 ~ 53519871 (-)
G1388516 NA non-coding upstream 63093 53562974 ~ 53626438 (-)
G1388521 NA non-coding upstream 66530 53566411 ~ 53569175 (-)
G1388236 NA other downstream 465603 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 926217 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 1069765 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1508529 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2383459 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 230456 53730164 ~ 53757019 (-)
G1389763 NA other upstream 1044847 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1484937 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2324278 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2564622 56064503 ~ 56064862 (-)

Expression


Co-expression Network