G1388521


Basic Information

Item Value
gene id G1388521
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 53566411 ~ 53569175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1585864
aacaaGTATAGTGTAAAGAGTCATTATACAATCTaaactagggatgcacgatacCAAATCGGTAAATATATCTGAATCGGACggtattagctaaaaatgccaacatcaacCCATTGTCTAGTTTAACACCgttgtgcaaaaccgatgtcaaagctgacgtgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtccatacctatataacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccaTACCTATATAAGCGTAGGTAGATGACATGCATACCTATagaaacgtaggtagatgacatgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtccatacctatataacgtaggtagatgacgtacatacctatataacgtaggtagatgacgtacatacctatataacgtaggtagatgacgtacatacctacataacgtaggtagatgacgtacatacctacataacgtaggtagatgaaaAATACAGCGCTACACAGCATttctaacctagcccacaatgtctgctgtgtggatcgaacAGTCAACAAGCCAAggagtcatttgaaagagtaagaa
>TU1585865
atataaacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtgcatacctatataacgtaggtagatgacgtccatacctatataacgtaggtagatgacgtccatacctatataaacgtaggtagatgacgtgcatacctatataaacgtaggtagatgacatccatacctatataaacgtaggtagatgacatccatacctatataaacgtaggtagatgacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1585864 False 807 lncRNA 0.39 3 53566411 53569175
TU1585865 True 237 lncRNA 0.38 2 53567871 53568231

Neighbor

gene id symbol gene type direction distance location
LOC110491099 LOC106572329 coding downstream 126150 53438992 ~ 53440261 (-)
LOC110492286 LOC106566818 coding downstream 189419 53324324 ~ 53376992 (-)
LOC110492285 tpx2 coding downstream 252853 53303341 ~ 53313558 (-)
LOC110492284 LOC106566930 coding downstream 269125 53290006 ~ 53297286 (-)
LOC110492280 LOC106566823 coding downstream 285826 53263801 ~ 53280585 (-)
LOC110492292 LOC106566814 coding upstream 38235 53607410 ~ 53617096 (-)
LOC110492291 LOC106566813 coding upstream 48358 53617533 ~ 53633437 (-)
LOC110492293 LOC106566812 coding upstream 70695 53639870 ~ 53666843 (-)
LOC110492295 LOC102779685 coding upstream 109135 53678310 ~ 53681048 (-)
LOC110492296 LOC106566808 coding upstream 119997 53689172 ~ 53695764 (-)
G1388482 NA non-coding downstream 46540 53519349 ~ 53519871 (-)
G1388481 NA non-coding downstream 47151 53518199 ~ 53519260 (-)
G1388453 NA non-coding downstream 64274 53501766 ~ 53502137 (-)
G1388454 NA non-coding downstream 66530 53498524 ~ 53499881 (-)
G1388466 LOC106572237 non-coding downstream 69145 53494485 ~ 53497266 (-)
G1388480 vps13d non-coding upstream 28902 53598077 ~ 53599765 (-)
G1388532 LOC106566810 non-coding upstream 100543 53669718 ~ 53671690 (-)
G1388578 NA non-coding upstream 114743 53683918 ~ 53684208 (-)
G1388583 NA non-coding upstream 133825 53703000 ~ 53703266 (-)
LOC110491101 LOC106566920 non-coding upstream 147565 53711870 ~ 53727973 (-)
G1388236 NA other downstream 533490 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 994104 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 1137652 52379551 ~ 52428869 (-)
LOC110492226 LOC106572002 other downstream 1576416 51978399 ~ 51990025 (-)
dffb LOC106566885 other downstream 2451346 51113403 ~ 51117850 (-)
LOC110492299 LOC106566805 other upstream 161162 53730164 ~ 53757019 (-)
G1389763 NA other upstream 975553 54544728 ~ 54545243 (-)
G1390030 ifrd2 other upstream 1415643 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 2254984 55824155 ~ 55826646 (-)
G1391586 NA other upstream 2495328 56064503 ~ 56064862 (-)

Expression


Co-expression Network