XLOC_032902 (zbtb11)


Basic Information

Item Value
gene id XLOC_032902
gene name zbtb11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29144776 ~ 29159888 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063934
CGTTCCCCCTTGGAAAACATTTCAGAAATATCAACCTCGATACATTTCTGGATCATCCATGGAAGTGCAAAAGGGCTGAAAAAATACGTCATTGAATTCTGCGCTCGAGAATACCTCTCATTGGCCGATGTGTCTTGTTTTTGTTGCGTGAGCGTCATTAATCGGGGTAATGTCGAGCGAGGAGAGTTATTTAGCCATCCAGCGCTACTTGACCGATGAACGCGAGCCGTACGCGCCGGGCACGCACGGCAACACCAAGAGGAAGATCCGAAAGGCAGCAGCCTGTTACATAGTGCGCAATGGAATCCTTTACTATCAGCGTCGGCAGAAAGGCTTGGATGAGTTCACGGAGCTGGAAGTGGTGCTGACGGCCGACAGGCGGAAGGAACTGATCACGGAGGCGCACATCACGTCCGGAGGGGAACACCTCAACCAGCAGCAGACGTGGGAAATCATCTCCCAGAAATACTGGTGGAGAGGTGTGCTGAAGCAAGTGAAGGACTGCATCAAGGAATGCATTCATTGCCAAACCAAGCAGGAGAAGGGGAGAAACAATACTGAAGATGCCCCAAAGCAAACTGCCCGACAAGTTCGACAGAAGATCTCCTCTGCCTGTGCCAGTGAGGAAGAGGATGATGAAATACATGAGGATCTGGAAGAGGAGCAGTCCACTACAGTTGATAAACATGAACTGGTTTTTGTGGACAGTAAGGGAATTGTCAAGCAGTTTTTACAGAAGCATGGGCAGACAATGCTGGACAAGCTTAACCTGCAGCGAATGAATAATGAGTTCTGTGACATCACACTGATCATTGAAGGCGAGGAGTATCGTGCACATAAAGCTGTCCTGGCCTCCTGCAGCGATTACTTCTATGAGCTCTTTGTGGAAAAGGGTGCTGTATCCAGTCATGAAGCTGTTGTTGACCTCTCCGGCTTCAGCAAAGCCAGTTTCCTGCCCTTGCTGGACTTTGCCTACACCTCCAATCTGACCTTCAACTTTTGCGTGATGGCAGAGGTTGCCACGCTGGCACGCCATTTATTGATGGCTGAAGTTCTTCAGATCTGTGAGTCTGTGCATAAGAAAGTGGAAGAGCAGAAGCTGATGGTCTACCAGAGAGGAGACATCCACACTGTGCTGCCCAACCAGCCTGCGTCCACTCAGCCAATCACACCCACTGCTGCTGAAACATATGTGGTGACTATGCAGAGCGACGGCACAGCTGAAGCAGGACAATCCCTGGCTGTAATCACAAGTGAAATCGGCACGGCTGAATCACTGGCATTGCTGGCTGGTGCAACTGTAGATGGAGAAACCATGACTGTAGTTACTCACAGCGGACAGGCTGGTTCAGCTGAATCTCTTGCTATGGTGGCCCATAGTGGCCAGGCAGAGGAGGGCGAGACCATGACTTTGGTCACTCACTCTGGGCAGGCAGGTTCGGGTGAGTCCCTGGCTGTTGTACAGGCCTGTTGGTCTGTGGAGGAACCACAGGTTGGTGACACTCCTGTCGTACAGAGCATGCAAACAGGAGCTTTTCTTATTAGTGTGGATCCTGGCAAAACAGGCGCTTCTGAGATTGTGCATTTAGCTGCGGCAGCGCCCCCTGCTGTGCAAGATGAGCCCCAGGCTTCTAAACCCATACACCAAACTGAGCCACCAGCAGCAGCACCACAGCCATCCCCTGCACCGCTCAAGAGGAGGCCAGGAAGACCACCTAAAGTGAAGCAACAGGAACCACCACCTCCTCTGCCATCAGAGGATGAGCCAATGGAGATGGAGGGGGTTGAGGATGACGAAAAACAAGAGGACGAATGCATAGATCCCAACAAGAGATACCTAAGGAAACGATCTGTGAGGGAAGGAGGTTATGTTCGTCTGCATATGGGACTTGAGACTGAAGAAGAGGAGAAAATCACTTCTCCTCCTGCAAAGATACCTCAGAAAGGCCTTGCCAAGAGAGGGCGACCAGTTCAGTCTGCGAAGAAGAATCCTGAGACAGAGTTTTCAGAGACAAACCTGGAGGCTGCTCCCAATGCAATAGTGACTTCAGCAAAGGAACCGGAGCCTGTTATTGTAGAGCAGCCCGAGACTGTGGAAGAGGGTGCTCTGCCTGGAGACCCTGAAGGAGCGGTGGAGGGAGAACATGCGTGTAATGAGTGTGGCATGGTGTTTCAAAGGAGATACACACTCATCATGCATGCTCTGAAACATGAGAAGGCTCGCATCTTCAAGTGCAGCATATGCAATAAGGAGTTCCAGTACGCGGCCTCACTCCGTGCGCATTTGGCCCGTCACAAGCATCAAAAGAGCCAGAGAGCCAGTTTGACCCGAGCCATGGCCACAGAAGATTCTCAGGGCTCAGATGATCAGGCCAGATTTCGCACCAGACGAGAGTTCGTGTGCGACATCTGTGGCAAGACTATGCCCAAGCTGTACTCGTTGCGTATTCATATGTTGAACCACACGGGGGTGAGGCCGCACTCCTGCAAAGTCTGCGGGAAGAGCTTTGCCACCAAGCACAGCCTGAAGATGCACAGGGCACTGCACGACTCCCTCAAGAGGTTCCACTGCACGGTCTGTGAGAAGTCTTTCGTCACCAAAAGAAGCCTGGAGGAACATACAAGCATTCATACAGGGGAATCAAAGTACTTGTGCACGACGTGTGGAGCATCCTTTCATCGTGCGTCTGGACTGAGCAAACACCTCAAGAAGCATCAACCCAAACCTGAGGTCCGCTCATTCCACTGTTCTCACTGCGATAAGAGTTTCTTTGAAGCGAAAGaccttcagcagcacatgaacaagcacttaggCCTAAAACCCTTCCAGTGCCAGGTCTGTGGGAAATGCTACAGCTGGAAAAAAGACTGGTACTCGCATGTCAAATCGCACAGTGTTGCAGAGCCCTTCAGGTGTAATGTGTGTGGGAAGGAGTTCTTTGAGAAGGCCCTGTTCAGACGGCATGTCAAGAAAGCCACACATGGAAAGAAGGGCAGAGTGAAGCAGAACTTGGAGAGAGAGTGTGAACACTGTGGGAGGAAGTTCACACAGCTCAGAGAGTACCGCCGCCACATGAATAATCACCAGGGAGTGAAGCCCTTTGAGTGTCTGACCTGTGGCGTAGCATGGGCTGATGCTCGTTCGCTGAAGCGCCATGTTCGCACTCACACAGGCGAGCGCCCCTACGTTTGCCCATTATGCCAGGAGGCTCACATAGACGCCAGAACCCTGCGCAAACACATAACCAAGTTTCACGGAGATCAACTGCCTGGCAAGATCATGTTGGAGAAGGACACTCTTCAGTTCCACAACCAAGGCACTCAGGTGGAGCACGCCGTCAGCATCTTGAGCTCCGAGCTTCCTCCTGAACTTCAGCCTCCACAGCCTCCAGCAACAGAGGAGATCGAGACCGTGCTCATCACCGAAGAGACGGTGGAGGCCGTGCAGGCCATGAACGATGGCGCCGCGGTCACCACTCTCTCTGATCAGAGCATCATGCAGGTGGTCAATTACGTCCTGGCACAGCAGGCTGCAGTTAAAGTGGAAGAGGCTCCAGAGATCATCCAGACCATGGAGGTGGAGGTGGCGCATGTGGCCGAGGTGGAATGAGACATTGCTTATTTGGTCTTATTTTGTGTCATAATGTAAAAAAgtgctcatttatttttgttgtaaaatgtaaattaaaataagctCAAAGGGTTTTTTCTGAAAACACCCTTGCTTCAGTGTGTTTGTCTGAGTGACTCAGTGCATGATGTGGATGTGTGAATGTTTGCATTATAGTAAACTATAATGTGTACATAAACAGAATAATTTGCATTGTAATACAGTAGCAATTAAGGATACAACagattaacagttttttttttgtaattagctTACATTTTCTCATTCTCAaggctgcttttttatttttttggttatttgTAACACACACGTAAGCTCTAACAGTCTTGGCAAAAGGGCCATAGGCTCTTTTCTGTGGTTTAATGCGGTGCCTCTCGGTCTCAGCTGAGTACTATGTATAGCTGCAGAAATGACAACCAAATAAAAAACTCCCTGTCTACAGGGATGCACCATGTGCTA
>TCONS_00063935
CGTTCCCCCTTGGAAAACATTTCAGAAATATCAACCTCGATACATTTCTGGATCATCCATGGAAGTGCAAAAGGGCTGAAAAAATACGTCATTGAATTCTGCGCTCGAGAATACCTCTCATTGGCCGATGTGTCTTGTTTTTGTTGCGTGAGCGTCATTAATCGGGGTAATGTCGAGCGAGGAGAGTTATTTAGCCATCCAGCGCTACTTGACCGATGAACGCGAGCCGTACGCGCCGGGCACGCACGGCAACACCAAGAGGAAGATCCGAAAGGCAGCAGCCTGTTACATAGTGCGCAATGGAATCCTTTACTATCAGCGTCGGCAGAAAGGCTTGGATGAGTTCACGGAGCTGGAAGTGGTGCTGACGGCCGACAGGCGGAAGGAACTGATCACGGAGGCGCACATCACGTCCGGAGGGGAACACCTCAACCAGCAGCAGACGTGGGAAATCATCTCCCAGAAATACTGGTGGAGAGGTGTGCTGAAGCAAGTGAAGGACTGCATCAAGGAATGCATTCATTGCCAAACCAAGCAGGAGAAGGGGAGAAACAATACTGAAGATGCCCCAAAGCAAACTGCCCGACAAGTTCGACAGAAGATCTCCTCTGCCTGTGCCAGTGAGGAAGAGGATGATGAAATACATGAGGATCTGGAAGAGGAGCAGTCCACTACAGTTGATAAACATGAACTGGTTTTTGTGGACAGTAAGGGAATTGTCAAGCAGTTTTTACAGAAGCATGGGCAGACAATGCTGGACAAGCTTAACCTGCAGCGAATGAATAATGAGTTCTGTGACATCACACTGATCATTGAAGGCGAGGAGTATCGTGCACATAAAGCTGTCCTGGCCTCCTGCAGCGATTACTTCTATGAGCTCTTTGTGGAAAAGGGTGCTGTATCCAGTCATGAAGCTGTTGTTGACCTCTCCGGTGAGACAAATACAGAATTCTATTGATATAAATggtagtttaataaaataatacaaagtcaaggttttaaatgtATAACATTTTAGTATGTCCagtataaatgtgttttatttgcaTGTTCAAACTCTAGTGAGCTAGGGGCCATTTGTCCCCATTGAGAAAGCAAAAACTGAAGTGCAGCCTCAAAAGTGGCAGATCAAAAACACTGTTTATAACTAGCAACAGTTCTGTCTTTACAGTTCAGTCTAATAAATTAGAAATTCTCTGTCAGAAACTTtaatgaaagaaaaatatatttactgtgctcagcataattgagttcaccccattttgaaaatgaatatttttatccatttctcagtaaataaaGACAATTTATTTTTGGtgctttaaacaaaacagatttattattaaaataatagtcaccaaacatttagaaattgaaagataatacaattaaattcaagccaaatattgcaaaaaaaaaaaaaaa

Function

symbol description
zbtb11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within neutrophil differentiation. Predicted to be active in nucleus. Is expressed in head; intermediate cell mass of mesoderm; and nervous system. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ZBTB11 (zinc finger and BTB domain containing 11).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5055 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within neutrophil differentiation. Predicted to be active in nucleus. Is expressed in head; intermediate cell mass of mesoderm; and nervous system. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ZBTB11 (zinc finger and BTB domain containing 11).

Ensembl:

ensembl_id ENSDARG00000017886

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063934 False 4090 mRNA 0.50 10 29144776 29159888
TCONS_00063935 True 1425 lncRNA 0.42 3 29155914 29159888

Neighbor

gene id symbol gene type direction distance location
XLOC_032901 dipk1ab coding downstream 1313 29102942 ~ 29143463 (-)
XLOC_032900 evi5b coding downstream 58303 29011911 ~ 29086473 (-)
XLOC_032899 gfi1ab coding downstream 137283 29004062 ~ 29007493 (-)
XLOC_032898 NA coding downstream 158379 28984017 ~ 28986397 (-)
XLOC_032897 glmnb coding downstream 163947 28970513 ~ 28980829 (-)
XLOC_032903 dpt coding upstream 24249 29184137 ~ 29195642 (-)
XLOC_032904 nme7 coding upstream 67601 29227489 ~ 29288155 (-)
XLOC_032905 bivm coding upstream 135422 29295310 ~ 29305132 (-)
XLOC_032906 tmem131 coding upstream 153332 29313220 ~ 29377092 (-)
XLOC_032907 mrpl47 coding upstream 237666 29397554 ~ 29402578 (-)
XLOC_032892 NA non-coding downstream 1014646 28124381 ~ 28130130 (-)
XLOC_032890 NA non-coding downstream 1190175 27938489 ~ 27954601 (-)
XLOC_032887 NA non-coding downstream 1521255 27620675 ~ 27623521 (-)
XLOC_032886 NA non-coding downstream 1653029 27490737 ~ 27491747 (-)
XLOC_032908 NA non-coding upstream 250338 29410226 ~ 29411285 (-)
XLOC_032910 NA non-coding upstream 498013 29657901 ~ 29659956 (-)
XLOC_032911 NA non-coding upstream 591072 29750960 ~ 29752357 (-)
XLOC_032912 NA non-coding upstream 611479 29771367 ~ 29790125 (-)
XLOC_032913 NA non-coding upstream 666566 29826454 ~ 29831187 (-)

Expression


Co-expression Network