XLOC_032909 (pex5la)


Basic Information

Item Value
gene id XLOC_032909
gene name pex5la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29476933 ~ 29612269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063943
gagagagagagagagagagagagagagagagagtctgatAAAGGAGGGAGGAATTGCTGAAGAATCAGACCAACTACGATAAAAACCCCTCAGAGCCACACTGAGGCTTTGATTATGACGTAGGCAAGATTCTCGAGCGTTCAGCGCATCCGTCGCGCGCCTCAGCAAGTTGGTGAAGAGACTCGCCGGCGCGCGTGAAGCTCGGAGCGGCTGCACTCAAGCCTCCTCACCCTATAAAGTGCGTCGGTGACGAAAGCAAATTCAGCACTTAGTCCACGAGACAGCTCCAGTGCGACGACTCCCCAAACTGGACTTTCAGTACTTTCAGAACACTCTTGCGCGCATGAACAGTAGAAGTCTCCTCATATTTCTTGTGTTCATCTAACTGTGATCTGGGACCTTTTTTATTCTCCACTAAATATGTACCAGGGGCATTTGCAGGGGAAAGACTCTAGGGCTGCAGATAAGACCGTTGCCATGGTCCTGAAGGAGATTCCCAATAAGGCGTCCTCTGAAGGCAAACCCCTCCTCACGGTGACAAACAAGCTGGTGAGCGAGCAACAAGAGAGTCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGTGCTGCCCGACCAGTAACCTCAAACACAGCAGTACTGTCCTCCTCTCTGGACCTGCTGGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGAAAGAGCCCTCTTTCTTCTAAAAGCACACCGTATAGGAAGAAGCCAGATGAAACAGAGCTGATCCAAGTGGACATTGAACAGAGCATTCCCTGTTCCCGCACACCTGAAAAAATCTCATTGGACTCAGCAGCAGTTCCATCTTCATTGGACAAATGGGAAGAGCTCAACCCACACCCAGAGCGAACTGGTAGCAGAAAGTGGAAACTTGAGAGAAGACGTTCATCAAAGAATTCTGGTGAATTTGTGTGGTCTATGGATTGCAAGCCACAGCTAGACACTAGCCACAGGAACTCCCTGGAGGTAAACAATAAAGTAGAGGCAGAAGCCGGGCCAGTAACCCAAGGCCGATTGAGCAAAGAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGAGAGAGGAAACCCTTTAAACATGGCCAACATCCAAAGTCCTTTATGAGACCAACTTTGTCAAAAAGCaactttgtttcttttcttttttccgcAGAGCACCTTTACATTCCTGAGAACTGAGTGCTGGATGGTACTATTTTAATAGATTTGCACATCAGTTTAAGATTAAGAGCACAACGCCGGGTGAAGATTGTACAAGTATGCCTTAGAGAAAATATCAGCTAGTCCTGCTACAGAAGAAAATCTGTTTTGACTTGTAATTCTACGACTGATGAGACGAACGCGGACTATAAATGCGCAAGAACAAAACTCCAGATCAGTGACTTGATTAGACGTACTGTATTACGTAGACTTCATGCATTGGTTGAATTGCACTCTTTATTTGAGATGGCGaggttgttttattaatttgtttatttttggattttgGTGGCACTTGGTTGAACCCTGGACACTCCTCGCCTGATCTCTGCTGCATCTCCCCCTTTATTTCCTGGAGCTTGCAGACCAGATTTTAAAAAGCCTTACTTATTGTGCATGTAAAATAAGTTACTGAGATGATACCAGATAAAAGCCATTCCTTGCCATACTTTGACCTCTTGATAAAACTGAAACCGAAGTCTGCGTTTCAtcaaggtcttttttttttttgtttgtttgtaaaacaTACCACATCTTTGAAGTGTAGTAGGCCTACTGATTATTTTTCAGAATTCAAAGCAGGGAATTCACATATACTGCCCCGCAATATCAATCTAGATTTGACAGGAAAACAAGTGTCTTttgtatttttgaaaaaaaatgctgcCCAAAATCTAAGCCAAATATGTGTGATTATGACCCcgggtttcacaaacaaggtttaaggctagtcaagat
>TCONS_00063944
AGATTAAGGGACACCGAAAACATAACACTATTATTAATGAAAATTCAACACAGAAACAAAGAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGA
>TCONS_00063945
atgtatctaAATTACATGCAAAAACTCATTCCTCAAAATCTATATCTGGTGAGCGAGCAACAAGAGAGTCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGTGCTGCCCGACCAGTAACCTCAAACACAGCAGTACTGTCCTCCTCTCTGGACCTGCTGGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGAAAGAGCCCTCTTTCTTCTAAAAGCACACCGTATAGGAAGAAGCCAGATGAAACAGAGCTGATCCAAGTGGACATTGAACAGAGCATTCCCTGTTCCCGCACACCTGAAAAAATCTCATTGGACTCAGGTATTATAAAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGA
>TCONS_00063947
AtgcaaatgttgtatttacacaATACTTACCTCGAGCAACAAGAGAGTCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGTGCTGCCCGACCAGTAACCTCAAACACAGCAGGTACCAGAGACACTGACCATTCGGTTCTTCCTCAGCAATTCTGCTTATCCACTATAATGTACTCCAGTTCATTCAGTACAGGCCGATTGAGCAAAGAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGA
>TCONS_00063946
AtgcaaatgttgtatttacacaATACTTACCTCGAGCAACAAGAGAGTCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGTGATGGTGCTGCCCGACCAGTAACCTCAAACACAGCAGTACTGTCCTCCTCTCTGGACCTGCTGGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGAAAGAGCCCTCTTTCTTCTAAAAGCACACCGTATAGGAAGAAGCCAGATGAAACAGAGCTGATCCAAGTGGACATTGAACAGAGCATTCCCTGTTCCCGCACACCTGAAAAAATCTCATTGGACTCAGGTATTATAAAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTTTTGAGGAGGGATTGCGCAAGTCGAGAGAAGGAGAGCTGCCGAACGCTGTGCTTCTTCTGGAAGCTGCCGTTCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACACAAGCAGAGAATGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGGTGTCTGGAGCTCCACCCCAACAACCTCCAGGCCCTTATGGCTCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGGGCTGGATAAGACACAACCCCAAATATAAGCATCTTCTGAAGAGCCGCACGCACCTGCAGGGCTCACCTGGATCACGGAGACCCTCCTATCCCTGCCCAGTCAGCTGCCCCCTACTGCCAGAGGTGAAGGATCTTTACCTGGAATCGGCCCAGCAGAACGTGGACACCATTGACCCAGACCTACAGACTGGGTTGGGAGTGCTGTATAACCTCAGCTCTGAGTTCAACAAAGCAGTTGATGCTTTCAATGCAGCGCTGTCAGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGTGAGGAAGCAGTGGAGGCCTATACCAAAGCCCTGGAGCTCCAGCCTGGCTTCATCCGCTCACGTTACAACCTCGGCATCAGCTGCATTAACATGGGCGCTCACAGGGAGGCAGCCAGTAATTTCCTGACGGCCCTTGGTCTGCAGAGGAAGAGCAGGAGTCGTCAGCTTTCCCACCAGGTGATGTCTGGAAACATCTGGGCAGCGCTGCGGATCGCTCTCTCCATGCTGGACCAGCCGGAGCTCTTTCAAGCTGCTAACATCGGAGACCTGGATTTACTAATGAAAGCTTTCAACCTGGACATGTGA
>TCONS_00063948
acacacacacacacacacagcagtgtaGTGGAAATGAATGGCTTTGCCGCATGTCAAGCATGTCTTCAGGTGTACAGTGTTGAAAATGGTGCAAATTTGACGATTTCTGCTGAGCAAAGGTCTCCTGCCATGCTATTTTCAGATTTGCATACTGAGAAAAATGTGTGAGGGCAGTGCACTGTGCATGACAAGCCAGTCCAGAGCCATTATGAGTGTGAGAACATTAAGTGTGGACAGCAGGACCTCAAAAGGGAGTGAacgtgagaaagagagagagagagaaagagagagagaaagaaagagagaacgaAAGAAGACCTTGTGCTGTAATGATGGCATTTCTCCTTGCCTCTGGCATCAGAAGTTGGCAAGGGCAGGGCCTTTTCTCCTGTCAGAGTGACTGAGAGATGGCTGGACACGTTCTCTCTGACTGCTACTCTGTTTGCGTGTGTTTGACAGGGCCGATTGAGCAAAGAGCAGAGGTGGGGCAGCACACTGCTGTCCAGAAACCAGTCTCTGGAGGAGGAGTTTGAGAGAGCGAAGGCAGCAGTGGAGTCAGACACAGAGTTTTGGGATAAGATGCAGGCAGAATGGGAAGAACTTGCTCGCAGAAACTGGCTTACAGAAAATGAGCAGCCACAGATTCCCTCCAATGTGTCTCCTTACGAAAAGGGCTATTACTTCCACACAGATAACCCTTTCAAAGACTGGCCAAATGCTT

Function

symbol description
pex5la Predicted to enable peroxisome matrix targeting signal-1 binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be active in cytosol and peroxisomal membrane. Orthologous to human PEX5L (peroxisomal biogenesis factor 5 like).

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005052 peroxisome matrix targeting signal-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-298 Predicted to enable peroxisome matrix targeting signal-1 binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to be active in cytosol and peroxisomal membrane. Orthologous to human PEX5L (peroxisomal biogenesis factor 5 like).

Ensembl:

ensembl_id ENSDARG00000022518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063943 False 3108 mRNA 0.49 14 29476933 29612269
TCONS_00063944 False 1206 mRNA 0.54 9 29477812 29515709
TCONS_00063945 False 1506 mRNA 0.53 11 29477812 29537219
TCONS_00063947 False 1377 mRNA 0.54 10 29477812 29538085
TCONS_00063946 False 1485 mRNA 0.53 11 29477812 29538085
TCONS_00063948 True 721 lncRNA 0.48 3 29497961 29514132

Neighbor

gene id symbol gene type direction distance location
XLOC_032908 NA coding downstream 65648 29410226 ~ 29411285 (-)
XLOC_032907 mrpl47 coding downstream 74355 29397554 ~ 29402578 (-)
XLOC_032906 tmem131 coding downstream 99841 29313220 ~ 29377092 (-)
XLOC_032905 bivm coding downstream 171801 29295310 ~ 29305132 (-)
XLOC_032904 nme7 coding downstream 188778 29227489 ~ 29288155 (-)
XLOC_032910 NA coding upstream 45632 29657901 ~ 29659956 (-)
XLOC_032911 NA coding upstream 138691 29750960 ~ 29752357 (-)
XLOC_032912 NA coding upstream 159098 29771367 ~ 29790125 (-)
XLOC_032913 NA coding upstream 214185 29826454 ~ 29831187 (-)
XLOC_032914 NA coding upstream 234224 29846493 ~ 29848847 (-)
XLOC_032898 NA non-coding downstream 490536 28984017 ~ 28986397 (-)
XLOC_032892 NA non-coding downstream 1346803 28124381 ~ 28130130 (-)
XLOC_032890 NA non-coding downstream 1522332 27938489 ~ 27954601 (-)
XLOC_032887 NA non-coding downstream 1853412 27620675 ~ 27623521 (-)

Expression


Co-expression Network