G1389769


Basic Information

Item Value
gene id G1389769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54552120 ~ 54556071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587239
aaataattcacatttctcaAGACTTAAAAAAAGACAAAACCCTGACATCAGAATGCTACAAGAATGAAACGCCACAGACGGAGCACTGGCAAAATCTGATCTGAAAACAACAGTGACGTAAggtacttaagtagtattttaaagtatttttactcaagtagtttaggcgtatctgtactttactatttatatttttgactacttttacttcactacattcctaaagaaagtattgtactttttattccatatattttccatgacaaccaaaagtacttaTTTAATTTTTAactcttagcaggacaggaaaattgtgaaattcacacacttatcaagagaacacacggtcaaccctactgcctctggtctggcggactcactaaacagacatgcataatttgtaaataatgactaagtgtgcccctggctatctcaaaaaaatatatatattttcagtacttttacttttaatacttaagtatattttagcaattacatttacttttgatacttaagtatatttaaaaacaaatacttttagatgtttaatcaagtagtattttactgggtgactaacttttacttgagtaactttctattacttttactcaagtataaccattgggtactttttccacatttggaaATCAAACTAAGATAACGTTAATAGCTCACTGGCAGAAAATGCAAAGTGGGTAATGATTGGCTACCACAGAAGCCCAAGTGAGTGACCTTTGACTAGCTAAGAACAATGGTGCGTATGCAAGTAAACATTTTGTGGACGAAGTATACGTGTCCcatacatacgactaataaaacttgaaacaaaCTGGAAACTGTCCTCTGTGAAGACATCCATACAAATGTACACACCCTTAAACAACACAATCATGTGAAAAATAAACACTATTAAAATGACCTTGTCCACTCACAGTGCTGAAAACATGAGACTAAAAGACAACTGTACTGCTCTGATGTGTGTTTCAAATGTCATTGTCACCTTTTTGCATATTGATCAAATTCTCTCAGAATAACAGCTCTGCTTCTACAGAATCAAAGACAAACCACTGGTACAGTGAGGTTAAATCATGAGTGTGCAATGATGGCGAGGGGGACAATTTGACTGAACCAAATACATGTGAATGCTTGACTTATGTAAAGGCCAAGGGCAGGCAACTCAAACGCTGAAAGCCTTCAAACATTTAAACATGAATATCCAAGCTACTAGGACATGTAAGAAGACCCAAACTCAGCCAAAGAACCAGGGCAGTGTATCATAGATATTCCCAGATCTCTGCCTGCACCTACCATTCCCCAAGGCATTAAAACATTACAGTATAGATCAGAGGGCAACACAGAGCTGCAACACCAAAGAGCGGTAAACAAGTCAAGTGACATCCAGTCCACTATGGCCAAGTTTCATGGAATAAGCAGACATCATGGAATTCCTTTTACATGTTAAGATACTGTATGTTGGGTCCATTTAAattcttatttatttttcaaataaGTATTATCATAATGAGAAGATAAAAGCACTTGTTTTTAAATACAATTTAACAGACTCTGCTTGCATAGCTAATGATGAAATCTAAGGCTTGTAAGTAATTAAAgcaactgtccagtgaaaatctcacatttaaaagttcatattctgttaactcatacagTGGCcaaaaaaacacttaaaaacaCCACCTCAAACTTGTATCACAAACAAACATTTCCTCAtagaggatgagctggccaatcagcagtctaCTTGCCCACACCATGTGACCGGTATACGTCCACACCATTCCAACATAGAAAAGCTGATTTTAACATAATTAAACATTTTTGGAAGGATAATTTAAGTAAGTAATATGGTAGTTAATTCTAAGTCATTTCTATGCAATATGAATTAACTATATAGGTCATAtatgggggtggcaggtagcctagtggttagagcgttggactagtaaccgaaaggttgccaaatcaaatcccagagctgacaaagtaaaaatctgttgttctgcccctgaacaaggcagttaagccactgttcctaggccaacATTTTAATTAAAAACGTATTCTTATTTtcataaaggttaaaaataaatatgtcagaaatctggaaacactggacagttactttaagatATGATTGGTAAAGTCTATGTAAATCATTTCAGTTTCGTAGTCAAAACATGCAATCATCGGCTTGCAGACAGCTCATGTCACCAAAGCTAATACAAACACTAAAAGCATGCAATAGACAACTATGAATTCATTCTAaatacagaacagtacaccaGTCTCTGTGTAACGATATCAGTTTTGTTTGAACCTGTTGCTATGGATTGTCGTCTAGGACAGGAGATTGAGTGAGCTATACTCAATCTTGCCCTCTTCATCTGATTTTAGGTAATGTCATCAGATGGACGTCTCTAGACTATATGCTCAGTTTCAGACACAGTGTCTATTCCCCCCCAACCAAGTTGAAAAGGACATCAGTTTAGTGAAAGAGTTACTTATGTTCAACTAGTGCTTGAGGAATCTGTGTCATTAATTAGAGTAACTTATCAAAGTAAATTAAATTTAAATTCCATTCAAAacatgattttattttatttagaaacTACATTTTCTTTATCTAAAAGCCATCCATTGTTACATGTCAATTCACTAACTACATACAGGCTCTTCCAGCCATTCTCCTCAAGACAGCAGCTGGACTTTAATAAATGGAATTAAGAGAGTCAGTTGGTCGCCGACTGAATTGATTTATAAATAAATACTTACATTCATGTAGAAACCTATGGGGAAAAAAAACAGTTGGTTCAACAACTTAAGATGAATGAATACTGAGAGAACTACCTTTCATTTGCAATTAGGATAGATAGATTCACATGAACATCTGGATGATATGAACATAAATAAAAACGAAACAAAAGCCCTGGGTTACATTTTCTATCTGCTAATGAGTGGTTCGACCACCTTGACTGGTTGGTCctgaaattcacacacttatggGTCAGATGTCTATTCAGACGTATATATAGCATTTCTCAAGTCATGTAACAAGAATCAACGTGTTCTAGTAAACGAACAGAAAACATTTCCCTTACAAAAACAGAACAAAAAAAGGAATTAATAAATATGCACTGTAATAAATAAAAGtggtacataaaaaaataaaaataacaggtcAATTAACACGTTAAGTATGGTATGAAAAGATGAACAAGTCTGATGATGTAAGGGTCTGATAATAAACTCAATAACTGGAGTTTAAAGCTCTTGCTGAAGAGACTCAAGGCTAGGGACTTGGTGGAGGTGGTGGGCTGGGCTTCCCTCTTCCCAAAGTGTTGGGTAGTTGCCGCGTTCACATGCTAGTTGGAAAGTCAGACATTTCCCCGACTTGCTAATTGGTTGTAGTTATACACATGCCGcgttcaaccagttagcaagttggACATTCCCGAGCTTCCTAGTTCTGACTAGCACGTAAATGCGGCATGAGACAGTAGGTGGCCAATGTATGTAATGAGGGGGGTAAATAACAGTCAGCAGTAACAGAAATGAAAAGTTCTGTTGTTTATTATACAGAACCAGGTCACAGACCTCCCCCATCTCTAAATCAATGTCCCGGTACTCTGTTACACAGTGAAGTCTTAAGCCAGCATCATCTTTACAATGAGCTCACAAAGTCTATAATGACAAAACTGTGACCAAATTAGGGAAAGAAGCCCTCTTCTCTAGGCCAATAGCAGTTGACGGTGACGTTTGGTTGCTTCAGAGAATGACCTCTCTGGAGAGGATCATTGTTGTACTTTTTTTGGCACAGCTATTTTTGACTCCTCTCAAATGATTTTGGTTTGACAATGGTCTCTTGAAACCTGTTTGTTTTTCCGTTGAAATCACATACGCCAAAGATGAGAAAAAGGAACTGAAAACGAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587239 True 3952 lncRNA 0.36 1 54552120 54556071

Neighbor

gene id symbol gene type direction distance location
LOC110492306 LOC106566792 coding downstream 96104 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 315184 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 583985 53956911 ~ 53968135 (-)
LOC110491103 LOC106566803 coding downstream 632773 53776875 ~ 53919347 (-)
LOC110492300 LOC106566804 coding downstream 775919 53758360 ~ 53776201 (-)
LOC118936330 NA coding upstream 79314 54635385 ~ 54635876 (-)
LOC110491107 NA coding upstream 83400 54639471 ~ 54640714 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 399791 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 610692 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 794073 55350144 ~ 55372295 (-)
G1389765 LOC106566793 non-coding downstream 2282 54549475 ~ 54549838 (-)
G1389764 NA non-coding downstream 4982 54546845 ~ 54547138 (-)
G1389754 NA non-coding downstream 20693 54531217 ~ 54531427 (-)
G1389753 LOC106566793 non-coding downstream 21165 54530624 ~ 54530955 (-)
G1389707 NA non-coding downstream 89353 54457221 ~ 54462767 (-)
G1389766 LOC106566794 non-coding upstream 5431 54561502 ~ 54566568 (-)
G1389770 NA non-coding upstream 12072 54568143 ~ 54568364 (-)
G1389771 NA non-coding upstream 12520 54568591 ~ 54569290 (-)
G1389777 NA non-coding upstream 23551 54579622 ~ 54579826 (-)
G1389837 NA non-coding upstream 113955 54670026 ~ 54700613 (-)
G1389763 NA other downstream 6877 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 819205 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1519199 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 1979813 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2123361 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 428747 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 1268088 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1508432 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1669343 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1724981 56240763 ~ 56293503 (-)

Expression


Co-expression Network