G1389766 (LOC106566794)


Basic Information

Item Value
gene id G1389766
gene name LOC106566794
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54561502 ~ 54566568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587235
TAGAAAGTAATTTATTACACAATGTAACCAAGGCTAGTTTACAAATACAGTTCCAGTCATGTATGTGTATACATATGAATATACCCACGTCTTATATTTACAGATTTGCATACATGTTTTCCTGTTTATTCATTTCAACACTTACTTTACGGTTTCACATCCAAAAACTAAAATGATTTGTACATAAGAGACTTAAAGGAGTTCAGCCCTGTGTGTTCCAAACAAAGAAACGGCAGCCAGCCCAGAGTCCAGGCAGACAGAGCACTTGACTGGCAGTCCAGAGGCCAGCCCTTCTCACGACTGCCCCAACAACAGCATTTGGCAGGTGAAATTTAAATACTGATAAATGTTTACCATGACTTAAAAAAATAAGATGAATAAAAACCAAACATCAACAAAAAAATTATACGATCTAAGATCATCTCCCAAAGCAAGGACACGAGCTCCAACGGTCGGTCGGCAAGTGTGAGGGGGTCGGGGGGTTGGTGAGATGTAAACAGGTGCTTATCCAACCCCCTTTGTCCATCCACACACTTGCCAGAGCCCCTGGTACAGGGACTGAGTCCTGTCATACAGTCTACAGAAGGAGACATTTATTGCTTTTCTTTCCTCGCCGGGCCTGTAGTGCCGCCCTGGTGGCCATCTCAAACACCTCCCGCACGCCATCCTTCGTCTTGGCCGAGCACTCCATATAGCCGAACGCTCCGATCCGGTTGGCCATGTCACGGGCCTCCTCTGGCTTCACTGGCTCctgcttcatcttggccagctCCCGGCGTGTGTGTTCATCATTGCGCAGGTCCTTCTTATTGCCTACGAGGATGATGGGAACGTTTGGACAGAAGTGTTTGACCTCTGGAGTCCACTTCTCTGGAATGTTCTCCAAGCTGTCTGGGCTGTCAATGGAGAAGCACATGAGGATGACGTCAGTGTCGGGGTAGGAGAGGGGGCGAAGCCTGTCGTAGTCCTCTTGGCCAGCTGTATCCCACAGAGCCAGCTCCACCTGTTTGCTGTCCACCTCAATGTCAGCCACATAGTTCTCAAAGACAGTGGGTACGTAGACCTCAGGGAACtggtctttactgaagactatcAACAGACAGGTCTTCCCACAAGCACCATCTCCCACAATCACCAGCTTCTTACGAATCGCTGCCATGCCTGTTGTTTAGATGGCTGCAGTCGTTTTCCCAGGGCTGTCTTGCTTCGCCGTTAACCCTCGTTTCGATACAATGTTGAATTACTTTGCGTGTGCACGCGAGGGGGAGGGGTGGCGGGGACGAGCGTGAGCCACGCCTGCGCGTGCACGTCACCCGGTTTCGATGAGCATCCAAACCGTTTTGATTTGGTTTTTCAATAATAGTTGCATTCCAAAACTTTTTCCACACAAAATAAATGTTAGAAAGGACCCAAGAAGTGGACAGGTTATGCTTCCTTCCTTCGCATTGGGTCATTCTACGAAAATGGTGGCTTTGCTGTCCCAGCCATAACCACCAGGAAAAACAGTTCGTGTCAGATAATGACAAAGTATATTGTTAATAAAACATATGTAAGACAGTTAAATTGCAAACCatgttttgtatatattttaGAGTCGATGTTTAGTGACAtattttgattttaaaaaagttttttttttctcccacttTAAATGTCATAAAGCAAAAGAAAGTATAAGCTTTATGTTGTGGCCTACTTAAAAACAAATATAAATATCAACTCATTATTCAAAATAATTTTGTGAATAGCTGTCCCTCAATTCCATGTCACTGGTGTTACCACTGAGGGGTGTTACCCTTTATAAAATGCACCACTTTGAAAAGATTCAACCATTTGGCAACTTT

Function

NR:

description
PREDICTED: transforming protein RhoA-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587235 True 1844 lncRNA 0.45 5 54561502 54566568

Neighbor

gene id symbol gene type direction distance location
LOC110492306 LOC106566792 coding downstream 105486 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 324566 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 593367 53956911 ~ 53968135 (-)
LOC110491103 LOC106566803 coding downstream 642155 53776875 ~ 53919347 (-)
LOC110492300 LOC106566804 coding downstream 785301 53758360 ~ 53776201 (-)
LOC118936330 NA coding upstream 68817 54635385 ~ 54635876 (-)
LOC110491107 NA coding upstream 72903 54639471 ~ 54640714 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 389294 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 600195 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 783576 55350144 ~ 55372295 (-)
G1389769 NA non-coding downstream 5431 54552120 ~ 54556071 (-)
G1389765 LOC106566793 non-coding downstream 11664 54549475 ~ 54549838 (-)
G1389764 NA non-coding downstream 14364 54546845 ~ 54547138 (-)
G1389754 NA non-coding downstream 30075 54531217 ~ 54531427 (-)
G1389753 LOC106566793 non-coding downstream 30547 54530624 ~ 54530955 (-)
G1389770 NA non-coding upstream 1575 54568143 ~ 54568364 (-)
G1389771 NA non-coding upstream 2023 54568591 ~ 54569290 (-)
G1389777 NA non-coding upstream 13054 54579622 ~ 54579826 (-)
G1389837 NA non-coding upstream 103458 54670026 ~ 54700613 (-)
G1389841 LOC106566786 non-coding upstream 114763 54681331 ~ 54682335 (-)
G1389763 NA other downstream 16259 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 828587 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1528581 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 1989195 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2132743 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 418250 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 1257591 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1497935 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1658846 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1714484 56240763 ~ 56293503 (-)

Expression


Co-expression Network