G1389771


Basic Information

Item Value
gene id G1389771
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54568591 ~ 54569290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587241
ggtcctgagtgctctgcagcaggttttcatcaaggacctctctgtaaattgctctgttcatctttccctcaatcctgactagtctccctgtccctgacgctgaaaaacatccccacagcatgatgccgccaccatcatgcttcaccgtagggatggtgccaggtttcctccagacgtgacgcttggaattccggccagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgatagtcctttaggtgccttttggcaaactccaagcacgCTGTTATGTGCATTTTAgaaaggagtggcttccatctggccaacataaaggcctgattggtggagtactgcagagctgattgtccttctggaaggttctcccatctccacagaggaactctggagctctgtcagagtgaccatctggttcttggtcacttccctgaccaaggcccttttcccccaacgtattctttgggaccttcaatgctgcagacattttttagtacccttccccagatctgtgccttgacacaatcctttctctgagctctacggacaattccttcgacctcatggcttggtttttgctctgacatgatctgtcaactgtgagaccttatctagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagt

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587241 True 700 lncRNA 0.48 1 54568591 54569290

Neighbor

gene id symbol gene type direction distance location
LOC110492306 LOC106566792 coding downstream 112575 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 331655 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 600456 53956911 ~ 53968135 (-)
LOC110491103 LOC106566803 coding downstream 649244 53776875 ~ 53919347 (-)
LOC110492300 LOC106566804 coding downstream 792390 53758360 ~ 53776201 (-)
LOC118936330 NA coding upstream 66095 54635385 ~ 54635876 (-)
LOC110491107 NA coding upstream 70181 54639471 ~ 54640714 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 386572 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 597473 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 780854 55350144 ~ 55372295 (-)
G1389770 NA non-coding downstream 227 54568143 ~ 54568364 (-)
G1389766 LOC106566794 non-coding downstream 2023 54561502 ~ 54566568 (-)
G1389769 NA non-coding downstream 12520 54552120 ~ 54556071 (-)
G1389765 LOC106566793 non-coding downstream 18753 54549475 ~ 54549838 (-)
G1389764 NA non-coding downstream 21453 54546845 ~ 54547138 (-)
G1389777 NA non-coding upstream 10332 54579622 ~ 54579826 (-)
G1389837 NA non-coding upstream 100736 54670026 ~ 54700613 (-)
G1389841 LOC106566786 non-coding upstream 112041 54681331 ~ 54682335 (-)
G1389861 NA non-coding upstream 141887 54711177 ~ 54718477 (-)
G1389871 NA non-coding upstream 166723 54736013 ~ 54757120 (-)
G1389763 NA other downstream 23348 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 835676 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1535670 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 1996284 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2139832 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 415528 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 1254869 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1495213 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1656124 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1711762 56240763 ~ 56293503 (-)

Expression


Co-expression Network