G1389841 (LOC106566786)


Basic Information

Item Value
gene id G1389841
gene name LOC106566786
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54681331 ~ 54682335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587317
GTGTAGTGAGAGACAAAGGCAAACTGGGAGACTAATAGAAAGAGGGCAGACTGAGTGGGAAGCACCAACAAGTAGCCAGACAGACCACTAAAGGGACATGCTAAGACTTGTACCTCCACATAGTCCCTGAAGAGGTAGCGTCTATACTTGTCCTTCAGCTCCTCACCAGGCAGCAGCGGGAGCACAAAGTCCTCTGGCATTTGGAGGGAACAATCCTGAGCCATACAGGAGatacCCACTCCCATCCCATCTTTGACGAGTACAGTGCAATGCTGCTCCCAGCATGTTTTGCAGAAGGAGTGCTGGCAGGGCAGCGCAAGCAGGGCATCCCTCCGAACCAGCTGCAGACACACCCCACACTGGAGGGACTGAGGGGTAGGAACTGATCTGCAGGTGCTGCTGGGCTGGACCTGGGCCTCAGACAGCAACTGAGATGAGTT

Function

NR:

description
E3 ubiquitin-protein ligase ARIH2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587317 True 440 lncRNA 0.55 3 54681331 54682335

Neighbor

gene id symbol gene type direction distance location
LOC110491107 NA coding downstream 40617 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 45455 54635385 ~ 54635876 (-)
LOC110492306 LOC106566792 coding downstream 225315 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 444395 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 713196 53956911 ~ 53968135 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 273527 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 484428 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 667809 55350144 ~ 55372295 (-)
LOC110492331 LOC106566684 coding upstream 693400 55375735 ~ 55383021 (-)
LOC110491111 LOC106566685 coding upstream 715302 55397637 ~ 55517109 (-)
G1389777 NA non-coding downstream 101505 54579622 ~ 54579826 (-)
G1389771 NA non-coding downstream 112041 54568591 ~ 54569290 (-)
G1389770 NA non-coding downstream 112967 54568143 ~ 54568364 (-)
G1389766 LOC106566794 non-coding downstream 114763 54561502 ~ 54566568 (-)
G1389769 NA non-coding downstream 125260 54552120 ~ 54556071 (-)
G1389861 NA non-coding upstream 28842 54711177 ~ 54718477 (-)
G1389871 NA non-coding upstream 53678 54736013 ~ 54757120 (-)
G1389935 NA non-coding upstream 130997 54813332 ~ 54821867 (-)
G1389985 NA non-coding upstream 205320 54887655 ~ 54887966 (-)
G1389986 NA non-coding upstream 206480 54888815 ~ 54889098 (-)
G1389763 NA other downstream 136088 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 948416 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1648410 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2109024 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2252572 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 302483 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 1141824 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1382168 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1543079 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1598717 56240763 ~ 56293503 (-)

Expression


Co-expression Network