G1389935


Basic Information

Item Value
gene id G1389935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54813332 ~ 54821867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587414
ATGAGGCTTCTACAGATGGAACAGAAGGTTCTAGATGATAAGAGACAGGCGaaggaaaaggaaaagaacagagagaaaaagagagagagagcttgtcaaacagtgagagagacagagaggttctTTATCAAAAAAGCTTTAATGGCTGGATTCAAAGCTTTACTGTATTACTGCAATAGAATTGTATTCAGCAGAACCCAGCCATTTATATGTAATAAGTTCAACCTCTCTGGTATACTCACATGACAGGTAGTTTCTTGGTCTCTTTCTGGGAGGGGTTGCAGGACATGCGAGCCACAAGCAGAAACATCCCACCATTCATCTGCAAAAATGAGACAGCaatgagacagacatgagacTAGCTCAAACTAGAACTACAGAGCTATAGAGGCAAACAaagtgactgacacagaactagaggtatagagGCAAACTaagtgactgacacagaactagaggtatagagGCAAACAAAGTGACTGACACAGACCTAGAGGTATAGAGGCAAACAaagtgactgacacagaactagaggtatagaggcaaacaaagtgactgacacagaactagaggtatagagGCAAACTaagtgactgacacagaactagaggtatagaggcaaacaaagtgactg

Function

NR:

description
cadherin EGF LAG seven-pass G-type receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587414 True 634 lncRNA 0.42 2 54813332 54821867

Neighbor

gene id symbol gene type direction distance location
LOC110491107 NA coding downstream 172618 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 177456 54635385 ~ 54635876 (-)
LOC110492306 LOC106566792 coding downstream 357316 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 576396 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 845197 53956911 ~ 53968135 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 133995 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 344896 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 528277 55350144 ~ 55372295 (-)
LOC110492331 LOC106566684 coding upstream 553868 55375735 ~ 55383021 (-)
LOC110491111 LOC106566685 coding upstream 575770 55397637 ~ 55517109 (-)
G1389871 NA non-coding downstream 56212 54736013 ~ 54757120 (-)
G1389861 NA non-coding downstream 94855 54711177 ~ 54718477 (-)
G1389837 NA non-coding downstream 112719 54670026 ~ 54700613 (-)
G1389841 LOC106566786 non-coding downstream 130997 54681331 ~ 54682335 (-)
G1389777 NA non-coding downstream 233506 54579622 ~ 54579826 (-)
G1389985 NA non-coding upstream 65788 54887655 ~ 54887966 (-)
G1389986 NA non-coding upstream 66948 54888815 ~ 54889098 (-)
G1389961 NA non-coding upstream 88148 54910015 ~ 54914644 (-)
G1389999 NA non-coding upstream 93435 54915302 ~ 54915518 (-)
G1390004 NA non-coding upstream 100603 54922470 ~ 54922918 (-)
G1389763 NA other downstream 268089 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1080417 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1780411 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2241025 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2384573 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 162951 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 1002292 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1242636 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1403547 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1459185 56240763 ~ 56293503 (-)

Expression


Co-expression Network