G1389961


Basic Information

Item Value
gene id G1389961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54910015 ~ 54914644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587440
CAACAGTCAAGGTTTATTGGTAACATTGTTTGAATAGGTTTTAGCTTATTTAGTAAGTTTCTTGTTTCTCAGTGGTCACAAGTCATTTCAAAACATCATATGTTACAGCAGTTCGTGTTACAAAAATGTTCAGTTTGAGGAATACAAACGACAGATCATTAAACATTGTTCCAACATCTTCCATCAGTCTCTCATCAACATTTTGTACGTAACCAAAACCATCATAGCACCAGACCTAGGTCAAATACTGTATTTGATgtgatttgcacttttgggactatttcaTTGGTTCCATTGTACTGGGCATGCCAAATCAAGTGCAGCTCAACTATTTGAAAGTATGTATCTATTAGACCCAGAGAACacctagggctctattcaatctgtagtGCTGAAGCGTTACAGTTGCACGATAAAAACGTTCCTGATTGTTCCGACATCTGCAGCTTTTACCGTCAGCTAACATGGGAACTTTGTCTTTAAATTTTAATGATACAAATTGAATGGAGCCCCTATTGGCCAAATTTGTCTCCAGTCTGATTTTatttgccccccccctcccccctctagtTTTCTGAGCAGAAAATACAAGTTTAATTGttagacataaaaaaaaacagtgaaaacaccagcaaatctgttccaagtattcccacacataatagagagatatatCTGATCAtttacaaatgtaagcaaggtttgaaaataTGATGTTTTAGTGAAATGTTATATATGTTTGGGTTTCTTgctgtcaatttgcagtctacaaattatttgcaaTTATTTTCCGGCCCCCTGATCATCCGctcaagaagaaaaaaaaatcagccggcggctgaatctagttgatgataccTGTCTACTGTATGAGGTGATTCAGCAATAACTGTTGGATTGGCTCAAGCCCCTGTCTCTAGAGACTGACTGCTGTTTGGCATGGCTGATTCTagtgcagtgtttcccaactctggtcctccagtaccccaacagcacacattttagTTGTAGCCCTGaacaaacacacctcattcagctcaatgagggcttgatgattagttgacaagtagaatcaggtgtgcttgtccaggccCACAACAAAATGATATGGGGAGAGTTGGGTAAATTGAGCCGCCCTTGTTTCTAGGAAGCCATACACAGAATGGACCAAATATTTAGAAAGAGATCCTAATTGCATGTAGTCTGGGAAgaaagaaaccacatggaaacagTACTAAACAAGTTCGGTCCAGAAAACAAATAttcaccaagtcaaatgaatTTATTGATTGGTCAGTTGGGGTCAACCTttgcatgaaagtgcatccttgtagctgtgtagGCTAATATaatcaaaatgtttgccttggggtaagtttaGCCAATGGCTATGGGTTAAGTTTAGCCAATGGCTATGGGTTAAGTTGAGCCAATGGCaagttgagcaaattgaaGCATTTCTTCCCAGGCGTGTCCTCAAACTGTTTTTGAAAAGTGCAAAGTGTTTATCATGTGTTAAGACTGTGTTAAAATATGATTAATAGACTAATGtgattgtgtttgggaaataaagacatgtgtttaaaAAGGTAGGGGTAATAATtaattcagtacagaaatgtATAGGTGGCTTAACTTACTCTGTCCTGCGGGTCAACTTAACCCATACCTGAGGTAAGCTAGGTTTTCAAAactaatgtttacatgaattctgattatttccagggacaCATAACATTCTGAAAAAAtgactcaacttaccccactcttccctactgttgggggtactaaaGGACCGgtgttgggaaacactgttctaGTGGGTCACATGAGAATGTAGTTTAAGCCCTTCAGCAATTTTCAGTCAGTCTTTAAGTGACCAAGGAGCCCAAGTTATTTTCACACAGGTTCTGGGAATAAAGCACAAAGCAACACGAATCACATAGTAAAATAAATTACACTTCATAAAATGGGCCATTCAGATTCTTACTGTATGTCCTTCTCAATTTCAGTTATCAGGTATTAGTTCTGAACGCTCAATAAAAAGTAAGTTGACTATAGTATAAAACCCTTATGTTCCACATCACGTTACTTTAAGTTAAGAATGCATAACAATAGAGTAGACAAGATCAATAAAAGTAGTTATATAGATGCAAACAGAATAATACTTATGTCCTTCACATATTATTCAATTTGTTATGAGCAATCTGACAGTTTATCAATATTTATTGATAAGAACATGTCTGGTTTCAGGAGTAACACATTTACAATTGGACAAATTCTGCCCTTTTCAAATATATGCCACCATATTGTTCTTAAAATGTGTGTTATTTAAAAACGGGTCATTCAGTTCACACACACAATGCTGATTTACTTTGTCCAAGATGTCCGACTGTTGTGTTCAATGTAATCTACTCACATTCGCCGTTTCATGGAATGGCTACATCCGTTTACACAGCACAACTTCACATGTACATAGCAGACATTGGATGAATATAACATCTGAATTTCTTCGGCTGTGAGTGATGAAGGAAAGAAACGGCCTCAGCAACAATTTGAATAATTAAATGGATGTTTTGTGCATAAAGATGACTAACGTGTCTTTTATTAGGAATGTTCTAATCTGACTTCTCTTAGCCAcagaggtgtcataatacccataaaacctagtggtcaaacaggaaaatggttccaatcatttctCCATCATTCATATCCATAGGTGactttagaaacacttaaaataagggctgtgtttcgtgtaggcttaccctggtgtgacgtttTAATAACTGTGTAAATCTCACTCAggcaaggtgacttttatcaatatgttTGGCTCTATTACTCTGATTCAAAAATGCTATTtggcatcaaagtagacatcatgcaaaactacaaatccctgcaagctcctgcacgtcatctctagctgacaccttagTTAATccagattcttacctttgccttgaTTCAGCTGTCtcatccagatcatcatggcatttgtagtagttaatgatagccacattagcagctaattagcatttgatttttggggggtaaatacaAGAGAATATATATTGAtataagtcaccttgtccgagacaGATTTACACGGTTATTAAAACATCATGCCAGGGGGGaacatttatggtggaaaaacgattggaaccagtTCCTTgcttgaccgctaggttttatggctattatgactcatactgtggtattCTATATGGCCAACTAAGGAAATGTAATTTCTGGGCCGGGTAtcagttaaactgcagtaccAAAGCAAGACTGCCGGAGCAGTCAAAACCGTGCTTATAGACAGAAACCCTGGCCCCTTGGTTGAGTTACTAACAATGGTCTATTGACAAATGTCTAGTCAATTGAATTTCACTTTATTAAATGCTTGACGCATCAGACAATTAGATTCACCAGTCTTCCCCTTACAAAACAACTTCCACCATTTAAAAGAGGAATATCGGTAACATGGATATTTCACATTATACATTAAAATCTGTATTAGTCGTTTGCAATGCAAACTATGGAGAAACACAGATAAATGGTGAGGTTGTAGGTGATGAATTGAGGCCGTCATCTTTTTCAATATAAGAACTGTAGCGAAGTGACGCCTTTGTCTGTACACAGCATGTACTGTATAATGATTCACAGCATGTACTGTATAATGATTCACAGCATGCCTCACCTTACTGTGGTGCTCTAATGGATTCAGCCTTTTTTTCCATAGGGTTTTTCCTGAGGTGTTGCCATAGTAACGGGCAACTTCTCCATCTTGGGTTGCAGCCACCTATACCCTGTAGTTCTGATAGATGACCACTAGTGGCAGCAATCTGGGGAGCTGGGTGTTCAAACAAGTCCAAAATGTTTGACTCTATGAACAAAGGATCTGAGATATGGTGGGGATAACAAAGGCCAGTTGTCTCCATGGCAACACACAAAAGGGAACACCTCAGCCTGGGCAAATTCAATATGTTTCTGTTGGCCTATTGAACACTGTGGTTACAAAGGAGGAAAAAACCCCTCTGTGAATTGTGCCTGGCCTAGCTCTCAGCATTGTTCCCTTTGAACTCAGTACAGGGAGACATGGCTGATATATGTACTATGAAATGCTGCCTGGCAGCTGGGGCACAACTGTTGTCCCTAATGAAGAGCTTAGAAAATCTGCTCCTACATTGGCCATGGGGGTCAAAGGTCACTGACAAGTTGACCTTAAGGAAACCTCCTGTGGGCCTCCTGACCTGTCACCCCCCACTTCTCCCCAGAGGACCAAGAGGTTTTAAGTCTGACTGACGTGCACAAGGCTGGGGTTGGGGTAAGGTGCAGTTAACTACATTTGTACTGCAAATGATCGCTACTGGTGGGCTAGCAGTAGAGTATATGCTGTCAGTACAAATGTATTTAGGTCATACAGTGGGTTGTGGGGTGAAGAGGAGGGGACTAGGAGCCCTGAGAAGGAGACACAGCGAGACGCTCAGAGATCCAGCCAGTGACTTCCTTCAGCACCGCCGCCACCGTCTCTGGGAGTTCATGGTGCAGGACGTGGTATGCTCCTTCGTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587440 True 4582 lncRNA 0.40 3 54910015 54914644

Neighbor

gene id symbol gene type direction distance location
LOC110491107 NA coding downstream 269301 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 274139 54635385 ~ 54635876 (-)
LOC110492306 LOC106566792 coding downstream 453999 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 673079 54163558 ~ 54236936 (-)
commd7 comd7 coding downstream 941880 53956911 ~ 53968135 (-)
si:dkey-20d21.12 LOC106566776 coding upstream 41218 54946478 ~ 54957989 (-)
sema3b LOC106566773 coding upstream 252119 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 435500 55350144 ~ 55372295 (-)
LOC110492331 LOC106566684 coding upstream 461091 55375735 ~ 55383021 (-)
LOC110491111 LOC106566685 coding upstream 482993 55397637 ~ 55517109 (-)
G1389986 NA non-coding downstream 20917 54888815 ~ 54889098 (-)
G1389985 NA non-coding downstream 22049 54887655 ~ 54887966 (-)
G1389935 NA non-coding downstream 88148 54813332 ~ 54821867 (-)
G1389871 NA non-coding downstream 152895 54736013 ~ 54757120 (-)
G1389861 NA non-coding downstream 191538 54711177 ~ 54718477 (-)
G1389999 NA non-coding upstream 658 54915302 ~ 54915518 (-)
G1390004 NA non-coding upstream 7826 54922470 ~ 54922918 (-)
G1389967 LOC106572271 non-coding upstream 23040 54937684 ~ 54939641 (-)
G1389960 NA non-coding upstream 28263 54942907 ~ 54943850 (-)
G1389763 NA other downstream 364772 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1177100 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1877094 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2337708 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2481256 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 70174 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 909515 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1149859 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1310770 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1366408 56240763 ~ 56293503 (-)

Expression


Co-expression Network