G1389965 (amt)


Basic Information

Item Value
gene id G1389965
gene name amt
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 54966441 ~ 54967063 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1587444
TGTTGCCTCCACAGGGGTGGTGGTCTCATCGATGTCGTTACCATAGAGACAGAGGCCTGCCTCCAGTCTCAGACTGTCTCGCGCCCCCAGTCCAGCCAGCTTGACCTCACTGTTGGCCAACAGGCGCTCCGTCAGGGCCACCACACCAGATTTAGGCACTGAGATCTCCACTCCGTCTTCTCCAGTGTAGCCACAGCGGGTCACCCTGCAACCCTGGATCCCAAACACAGTGGCCAGAGTGCTGGTCATGAAGGTCAACTTGCTGAGGTCATCTGTCAATCCCGGCTGGAGCACCTTGGCCATGGAGGGACCTGAGGAGGACATTACAGGGTCATATTCTTTAGTACACATAGTAGCAAAATGatttgcaacggaaaacaaaaatATCTTAtgggacaagttcaggtagttcctctctgtttcagttggccaaatcaacatttatttgtcacatgcgctgaata

Function

symbol description
amt Predicted to enable aminomethyltransferase activity. Predicted to be involved in glycine decarboxylation via glycine cleavage system. Predicted to act upstream of or within glycine catabolic process and methylation. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; eye; optic tectum; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in glycine encephalopathy. Orthologous to human AMT (aminomethyltransferase).

NR:

description
PREDICTED: aminomethyltransferase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1587444 True 464 lncRNA 0.52 2 54966441 54967063

Neighbor

gene id symbol gene type direction distance location
si:dkey-20d21.12 LOC106566776 coding downstream 8452 54946478 ~ 54957989 (-)
LOC110491107 NA coding downstream 325727 54639471 ~ 54640714 (-)
LOC118936330 NA coding downstream 330565 54635385 ~ 54635876 (-)
LOC110492306 LOC106566792 coding downstream 510425 54280345 ~ 54456016 (-)
LOC110491105 LOC106566796 coding downstream 729505 54163558 ~ 54236936 (-)
sema3b LOC106566773 coding upstream 199700 55166763 ~ 55255352 (-)
actr8 actr8 coding upstream 383081 55350144 ~ 55372295 (-)
LOC110492331 LOC106566684 coding upstream 408672 55375735 ~ 55383021 (-)
LOC110491111 LOC106566685 coding upstream 430574 55397637 ~ 55517109 (-)
LOC110492334 dkga coding upstream 601314 55568377 ~ 55582222 (-)
G1389960 NA non-coding downstream 22591 54942907 ~ 54943850 (-)
G1389967 LOC106572271 non-coding downstream 26800 54937684 ~ 54939641 (-)
G1390004 NA non-coding downstream 43523 54922470 ~ 54922918 (-)
G1389999 NA non-coding downstream 50923 54915302 ~ 54915518 (-)
G1390017 NA non-coding upstream 2970 54970033 ~ 54970294 (-)
G1390199 NA non-coding upstream 105301 55072364 ~ 55072714 (-)
G1390240 NA non-coding upstream 173017 55140080 ~ 55140423 (-)
G1390241 NA non-coding upstream 175145 55142208 ~ 55142489 (-)
G1390242 NA non-coding upstream 175846 55142909 ~ 55143242 (-)
G1389763 NA other downstream 421198 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1233526 53730164 ~ 53757019 (-)
G1388236 NA other downstream 1933520 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2394134 52566433 ~ 52577143 (-)
spen LOC106566857 other downstream 2537682 52379551 ~ 52428869 (-)
G1390030 ifrd2 other upstream 17755 54984818 ~ 54986263 (-)
LOC110492352 nua4l other upstream 857096 55824155 ~ 55826646 (-)
G1391586 NA other upstream 1097440 56064503 ~ 56064862 (-)
G1391624 NA other upstream 1258351 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 1313989 56240763 ~ 56293503 (-)

Expression


Co-expression Network