XLOC_032913


Basic Information

Item Value
gene id XLOC_032913
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 29826454 ~ 29831187 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064745
AAGAGATCCGACGAGACGGAGTTTCTTTCAATAAAGTTATGGGTCATTGGAAAACCACACAACTACAACGAAGATGGGAATTCTTGAAACAGTAAGCAGCAGCCACTTAATAACAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAGCTTTATGCTTTTGGATTATTGTATCCAAAAGTTCCTCttgaagatttttttcatttgtgtcaACTGGGTTAAGTAATCCATTGTTAAGATTTGATGgtgttttttatgctttttggTGGGACACAAAATGCTAGACTGGGACAGTGACAGATTGTGGCCTAAACCCAGCCATGGTCCAGAACCTCAACCAGATCTATTCATTCTGCTGGGTTTCTCTGCAGGCAGGAGCGGATCAGGCTGCAACACTTCTGCTCATTTACATCTATTCTAAACTGTAAGACAGATTTGATAACTTGTCCTGCATAATCTGCACAGCTAAATCTAGATAATTCTATGTAGTCTGCAGTCCggtttctttcttctcttttgTTAGAGAATTAAAGAATTTGACGTTGTTGTGTTGAAGATCTTAGTCAGACAAGCCAGACTTGGACCAAATGTTGAAGTTGATGAGATTGTGGTCATGGGTGTCATGAAATcccacacacacaagtgaaaacAGCAGCACACCTAGCAAATATACTATGGCCAGCTCCACATATTTTCCCATAGATTTAAATTTGGGTACATTAGTGTTCCTGTGAGAAGATgctttacaattaaaataatgctCATAATGTTAACAGTAAAAAAGTCAAAATCTACAACCTGGTTATAGCCTATAACCtagttttatgttatatttaatgttaattgCACCAGTTGTTAAGTAGTTGTGCGAATGATAGTGTGAACAATTAGTTGTTCATCATGCGACTTTCTCATCACCACATACATTTGGTTGTGTTTTTGTAACTATAACAAAGTTTTCAATGTAGAAACTTAATAATCTGAGCGatctgaattataattatttagtGCATACCCATAAAGGTTGTATATTCTGCACTCTGAAGGAGATCACCACAGCCAAAGTCAATAAGCTTGACTTCTAGTGTGTCCCTGTTGATAAGGAGGTTCTCCTGTTTAATATCTCGGTGGAAAACACCTTTGCAGCTCATGTATGTGGCTGTTATTGCCTGCCACATTACAATCCGTGCCAGTTCTTTATCAAGTCTCTCTGTGGCTCTGGACGAAAACGAAGAGGTCCTCGCAGGGATCAGACCGCTCCAGCACCATGATGTAATAGTTCCCCTTATCATTCCAGTCCAGCAGCTGGATAATTTGAAAGACTCTGGTGTTTTCATTGTCTAGAATCAATAGAGCGGCCTCCATCAGGAGACAACATCAGACCATGGCTAAGAGAAAGACAGTTTTGATGATGGTTAATGAAGTTTATATTGtcaaatagggctgggcgatatggcaaaaaaaaaaaggattatttttttatattggtcTATATTAATAGTTATCACAATAAATGTCAAATCTTTATATGTCAATTTTAAAGGCTTTTCAGCATAAAAATCTCTGTGCGGCTGATTTGgattttgtgaaatgttttagctgtctgacaatgcaaacaaaaaacaacaaccaaagacattacccTACAAGTAGTTGTatattgttcaacatcagaacAAATATAAAGCcggtttgtaacaagtaaaaggtaacagaattgtcagtttttggatgaactgtcctttAAATGGTGAGAATGGTGAATTTAAGGTGAAATATcctttaataaattttatttaggaATGCTAACGATtactgaatgattgattgattgtcaaTTACCCTTTAATCAACAGACCTTATCAatgactgattaagcatggacatttaaaggttaaGTTATGCTTTGTGCTGTGAGATGCATCCAGGCATTACATAATCGTGTGTAGTTTACCTTATCTTATGGAGTCACCCTTTTGACATTGCATACTGCGGGATGCATAAAACCCTGATATGTGCAGATCTTGTCTCACACTTCCGACTTCATTCTTCTGAGGTAATCTAAGAATACTTTCAGTGCTGTGAATAGTTTGTAAAGACTGTACTGGCTCATTCATACCGCTTGATTAAAGAAATTAAACTGAAACCatgaaaacagataaataaattattttgacgCTGAAGCATAAAATGACCTTGTTTTGAAGAGCTTCATTTCAGATGTAATTcgttcttgtttattttgtagataattgACCtacaaaagtaaattaaaatacaaattatacaaaatgattcttttttttcaaaaagatacaatttcaaagaaaaaaatg
>TCONS_00064746
GCGCCAACGGAACACAACACATTCAGTGCTAGCTGCCTCAAGAGATCCGACGAGACGGAGTTTCTTTCAATAAAGTTATGGTCACCACTGCACGTGAATGCACAACTGATGGATCTCTCTGCATGAACAAGGGTCATTGGAAAACCACACAACTACAACGAAGATGGGAATTCTTGAAACAGTAAGCAGCAGCCACTTAATAACAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAGCTTTATGCTTTTGGATTATTGTATCCAAAAGTTCCTCttgaagatttttttcatttgtgtcaACTGGGTTAAGTAATCCATTGTTAAGATTTGATGgtgttttttatgctttttggTGGGACACAAAATGCTAGACTGGGACAGTGACAGATTGTGGCCTAAACCCAGCCATGGTCCAGAACCTCAACCAGATCTATTCATTCTGCTGGGTTTCTCTGCAGGCAGGAGCGGATCAGGCTGCAACACTTCTGCTCATTTACATCTATTCTAAACTGTAAGACAGATTTGATAACTTGTCCTGCATAATCTGCACAGCTAAATCTAGATAATTCTATGTAGTCTGCAGTCCggtttctttcttctcttttgTTAGAGAATTAAAGAATTTGACGTTGTTGTGTTGAAGATCTTAGTCAGACAAGCCAGACTTGGACCAAATGTTGAAGTTGATGAGATTGTGGTCATGGGTGTCATGAAATcccacacacacaagtgaaaacAGCAGCACACCTAGCAAATATACTATGGCCAGCTCCACATATTTTCCCATAGATTTAAATTTGGGTACATTAGTGTTCCTGTGAGAAGATgctttacaattaaaataatgctCATAATGTTAACAGTAAAAAAGTCAAAATCTACAACCTGGTTATAGCCTATAACCtagttttatgttatatttaatgttaattgCACCAGTTGTTAAGTAGTTGTGCGAATGATAGTGTGAACAATTAGTTGTTCATCATGCGACTTTCTCATCACCACATACATTTGGTTGTGTTTTTGTAACTATAACAAAGTTTTCAATGTAGAAACTTAATAATCTGAGCGatctgaattataattatttagtGCATACCCATAAAGGTTGTATATTCTGCACTCTGAAGGAGATCACCACAGCCAAAGTCAATAAGCTTGACTTCTAGTGTGTCCCTGTTGATAAGGAGGTTCTCCTGTTTAATATCTCGGTGGAAAACACCTTTGCAGCTCATGTATGTGGCTGTTATTGCCTGCCACATTACAATCCGTGCCAGTTCTTTATCAAGTCTCTCTGTGGCTCTGGACGAAAACGAAGAGGTCCTCGCAGGGATCAGACCGCTCCAGCACCATGATGTAATAGTTCCCCTTATCATTCCAGTCCAGCAGCTGGATAATTTGAAAGACTCTGGTGTTTTCATTGTCTAGAATCAATAGAGCGGCCTCCATCAGGAGACAACATCAGACCATGGCTAAGAGAAAGACAGTTTTGATGATGGTTAATGAAGTTTATATTGtcaaatagggctgggcgatatggcaaaaaaaaaaaggattatttttttatattggtcTATATTAATAGTTATCACAATAAATGTCAAATCTTTATATGTCAATTTTAAAGGCTTTTCAGCATAAAAATCTCTGTGCGGCTGATTTGgattttgtgaaatgttttagctgtctgacaatgcaaacaaaaaacaacaaccaaagacattacccTACAAGTAGTTGTatattgttcaacatcagaacAAATATAAAGCcggtttgtaacaagtaaaaggtaacagaattgtcagtttttggatgaactgtcctttAAATGGTGAGAATGGTGAATTTAAGGTGAAATATcctttaataaattttatttaggaATGCTAACGATtactgaatgattgattgattgtcaaTTACCCTTTAATCAACAGACCTTATCAatgactgattaagcatggacatttaaaggttaaGTTATGCTTTGTGCTGTGAGATGCATCCAGGCATTACATAATCGTGTGTAGTTTACCTTATCTTATGGAGTCACCCTTTTGACATTGCATACTGCGGGATGCATAAAACCCTGATATGTGCAGATCTTGTCTCACACTTCCGACTTCATTCTTCTGAGGTAATCTAAGAATACTTTCAGTGCTGTGAATAGTTTGTAAAGACTGTACTGGCTCATTCATACCGCTTGATTAAAGAAATTAAACTGAAACCatgaaaacagataaataaattattttgacgCTGAAGCATAAAATGACCTTGTTTTGAAGAGCTTCATTTCAGATGTAATTcgttcttgtttattttgtagataattgACCtacaaaagtaaattaaaatacaaattatacaaaatgattcttttttttcaaaaagatacaatttcaaagaaaaaaatg
>TCONS_00063949
GCGCCAACGGAACACAACACATTCAGTGCTAGCTGCCTCAAGAGATCCGACGAGACGGAGTTTCTTTCAATAAAGTTATGCTGCAGGTCACCACTGCACGTGAATGCACAACTGATGGATCTCTCTGCATGAACAAGGGTCATTGGAAAACCACACAACTACAACGAAGATGGGAATTCTTGAAACAGTAAGCAGCAGCCACTTAATAACAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAGCTTTATGCTTTTGGATTATTGTATCCAAAAGTTCCTCttgaagatttttttcatttgtgtcaACTGGGTTAAGTAATCCATTGTTAAGATTTGATGgtgttttttatgctttttggTGGGACACAAAATGCTAGACTGGGACAGTGACAGATTGTGGCCTAAACCCAGCCATGGTCCAGAACCTCAACCAGATCTATTCATTCTGCTGGGTTTCTCTGCAGGCAGGAGCGGATCAGGCTGCAACACTTCTGCTCATTTACATCTATTCTAAACTGTAAGACAGATTTGATAACTTGTCCTGCATAATCTGCACAGCTAAATCTAGATAATTCTATGTAGTCTGCAGTCCggtttctttcttctcttttgTTAGAGAATTAAAGAATTTGACGTTGTTGTGTTGAAGATCTTAGTCAGACAAGCCAGACTTGGACCAAATGTTGAAGTTGATGAGATTGTGGTCATGGGTGTCATGAAATcccacacacacaagtgaaaacAGCAGCACACCTAGCAAATATACTATGGCCAGCTCCACATATTTTCCCATAGATTTAAATTTGGGTACATTAGTGTTCCTGTGAGAAGATgctttacaattaaaataatgctCATAATGTTAACAGTAAAAAAGTCAAAATCTACAACCTGGTTATAGCCTATAACCtagttttatgttatatttaatgttaattgCACCAGTTGTTAAGTAGTTGTGCGAATGATAGTGTGAACAATTAGTTGTTCATCATGCGACTTTCTCATCACCACATACATTTGGTTGTGTTTTTGTAACTATAACAAAGTTTTCAATGTAGAAACTTAATAATCTGAGCGatctgaattataattatttagtGCATACCCATAAAGGTTGTATATTCTGCACTCTGAAGGAGATCACCACAGCCAAAGTCAATAAGCTTGACTTCTAGTGTGTCCCTGTTGATAAGGAGGTTCTCCTGTTTAATATCTCGGTGGAAAACACCTTTGCAGCTCATGTATGTGGCTGTTATTGCCTGCCACATTACAATCCGTGCCAGTTCTTTATCAAGTCTCTCTGTGGCTCTGGACGAAAACGAAGAGGTCCTCGCAGGGATCAGACCGCTCCAGCACCATGATGTAATAGTTCCCCTTATCATTCCAGTCCAGCAGCTGGATAATTTGAAAGACTCTGGTGTTTTCATTGTCTAGAATCAATAGAGCGGCCTCCATCAGGAGACAACATCAGACCATGGCTAAGAGAAAGACAGTTTTGATGATGGTTAATGAAGTTTATATTGtcaaatagggctgggcgatatggcaaaaaaaaaaaggattatttttttatattggtcTATATTAATAGTTATCACAATAAATGTCAAATCTTTATATGTCAATTTTAAAGGCTTTTCAGCATAAAAATCTCTGTGCGGCTGATTTGgattttgtgaaatgttttagctgtctgacaatgcaaacaaaaaacaacaaccaaagacattacccTACAAGTAGTTGTatattgttcaacatcagaacAAATATAAAGCcggtttgtaacaagtaaaaggtaacagaattgtcagtttttggatgaactgtcctttAAATGGTGAGAATGGTGAATTTAAGGTGAAATATcctttaataaattttatttaggaATGCTAACGATtactgaatgattgattgattgtcaaTTACCCTTTAATCAACAGACCTTATCAatgactgattaagcatggacatttaaaggttaaGTTATGCTTTGTGCTGTGAGATGCATCCAGGCATTACATAATCGTGTGTAGTTTACCTTATCTTATGGAGTCACCCTTTTGACATTGCATACTGCGGGATGCATAAAACCCTGATATGTGCAGATCTTGTCTCACACTTCCGACTTCATTCTTCTGAGGTAATCTAAGAATACTTTCAGTGCTGTGAATAGTTTGTAAAGACTGTACTGGCTCATTCATACCGCTTGATTAAAGAAATTAAACTGAAACCatgaaaacagataaataaattattttgacgCTGAAGCATAAAATGACCTTGTTTTGAAGAGCTTCATTTCAGATGTAATTcgttcttgtttattttgtagataattgACCtacaaaagtaaattaaaatacaaattatacaaaatgattcttttttttcaaaaagatacaatttcaaagaaaaaaatg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064745 False 2358 lncRNA 0.36 2 29826454 29831148
TCONS_00064746 False 2448 lncRNA 0.37 3 29826454 29831187
TCONS_00063949 True 2454 lncRNA 0.37 3 29826454 29831187

Neighbor

gene id symbol gene type direction distance location
XLOC_032912 NA coding downstream 36329 29771367 ~ 29790125 (-)
XLOC_032911 NA coding downstream 74097 29750960 ~ 29752357 (-)
XLOC_032910 NA coding downstream 166498 29657901 ~ 29659956 (-)
XLOC_032909 pex5la coding downstream 214185 29476933 ~ 29612269 (-)
XLOC_032908 NA coding downstream 415169 29410226 ~ 29411285 (-)
XLOC_032914 NA coding upstream 15306 29846493 ~ 29848847 (-)
XLOC_032915 NA coding upstream 20006 29851193 ~ 29860852 (-)
XLOC_032916 NA coding upstream 252759 30083946 ~ 30085602 (-)
XLOC_032917 lrrc7 coding upstream 293010 30124197 ~ 30210378 (-)
XLOC_032918 FP236850.2 coding upstream 371734 30202921 ~ 30203037 (-)
XLOC_032898 NA non-coding downstream 840057 28984017 ~ 28986397 (-)
XLOC_032919 FP236850.1 non-coding upstream 390647 30221834 ~ 30221970 (-)

Expression


Co-expression Network