G1390645


Basic Information

Item Value
gene id G1390645
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55392690 ~ 55429824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1588222
GGCATGGTGATGGCATAGTGATGGCATGGTGATGGCATAGTGATGGCATGGTGATGGCATAGTGATGGCCACTTAGTGGGGTTTTGTCTAGAAGGGATGATACAGCTTTGGTACTTTTCatatagcaggttaggagaaataggttaaggttaggaaaagcgttaaggttagctaaaaataatttaaaaaataacttttgaCGTCAATTTGACAAAAGTTGTATCCCATCTAGAAATGACCACTCAGTGAGTGTTTCGAGAGTGGGGTTCAAATCCTGACATAATGGTATGCATGCATGCCTTCCAGGACTGGTAATGATAACTATTGCACCAGAGGTTATATCACTAGCTCAAATTGTCTTTGAGATGGTGAGACTATACTTTTCCTGGGGCTATGTACAGTTGAactcggaagtttatatacacttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttatgcatgacacaagtcatttttccaaaaattgtttataATTGTTTACAaacttaattcactgtatcacaattgcagtgggtcagaagtttacaaacactaagttgactgtgcctttaaacagcttgaaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacttgtggatgtatttcaaggcctaccttcaaactcattgcctctttgcttgacatcgtgggaaaatcaaaagaaatcagccaagacctccgaaaaataattgtagacctccacaattctggttcattcttgggagcaatttccaaatgcctgaaggtaccacgtaagtataaacaccatgggaccaagcagctgtcataccgctcaggaaggagacacgttctgtctcctagagattaacatgctttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggactttgtgaagatgcaggtacaaaagtatctatatccacagtaaaatgagtcctatatcgacataacctgaaaggccgctcagcaaggaagaagcaactgctccaaaaccaccataaaaaagccagactacggtttgcaactgcacacggggacaaagatcgtaatttttggagaaatgtcctctggtctgatgaaacaaaaatagaactgtttggccataatgaccattgttatgtttggagggaaaaggaggaggtttgcaagccgaagatcactatcccaaccgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgctacaggagggactggtgcacttcacaatatagatcaaatgaagaaggaaaagtatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccatatggacaatgacaccaagcatacttccaaagttgtggcaaaattgtttaaggacaacaaagtcaaggtattggagtggccatcataaagccctgatctcaatcctatagaaaatatgtgggcagaactgaataagtgtgtgcgagcaaggaggtctacaaacctgactcagttaaaccagctctgttaggaggaatgggccaaaattcacccaatttatttgtgtgaagcttgtggaaggctacccgaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaataaatatctctactattattctggcatttcacattcttaaaataaagtgccgatcctaactgacctaagacagggacattttactctgattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtgattACAGAGACCTTTGAGTCAGAGATCTGCCAAGTGATATGTGAAGGTAACTCCCACTAATTGAATCATCTTTATTTATACTGTTTGCAAGTGATAAAAACAAAAACTACTTTGAGAAACATAAGGTTTGATATGCAGCGTGTGCAACTCACAGCTTAATTGTTTGTACTGCTTCTGTTGTGTAAGAAACTGTGCAGAATGTGAAGGTTAAAGTGATTCACTGTACTTGAAGAATCCTGCTTTCTACCCGCTAACATTACAGATGATTCCACTTTGTAGCAGATTAGTTTTACCTTCAGATTTTATACTGTTGAAACCCCTTTTTTTTTGTACAGTTCCTTTATTCTTTTGAACATTTGCCTGGAATGCTGATGATTTTGTAACGATCACAACTGAATAAACTCTCTCCAAGTCACTCAA
>TU1588223
ccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcataaagccctgatctcaatcctatagaaaatatgtgggcagaactgaataagtgtgtgcgagcaaggaggtctacaaacctgactcagttaaaccagctctgttaggaggaatgggccaaaattcacccaatttatttgtgtgaagcttgtggaaggctacccgaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaataaatatctctactattattctggcatttcacattcttaaaataaagtgccgatcctaactgacctaagacagggacattttactctgattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtgattACAGAGACCTTTGAGTCAGAGATCTGCCAAGTGATATGTGAAGGTAACTCCCACTAATTGAATCATCTTTATTTATACTGTTTGCAAGTGATAAAAACAAAAACTACTTTGAGAAACATAAGGTTTGATATGCAGCGTGTGCAACTCACAGCTTAATTGTTTGTACTGCTTCTGTTGTGTAAGAAACTGTGCAGAATGTGAAGGTTAAAGTGATTCACTGTACTTGAAGAATCCTGCTTTCTACCCGCTAACATTACAGATGATTCCACTTTGTAGCAGATTAGTTTTACCTTCAGATTTTATACTGTTGAAACCCCTTTTTTTTTGTACAGTTCCTTTATTCTTTTGAACATTTGCCTGGAATGCTGATGATTTTGTAACGATCACAACTGAATAAACTCTCTCCAAGTCACTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1588222 False 2397 lncRNA 0.39 2 55392690 55395110
TU1588223 True 915 lncRNA 0.37 2 55392690 55429824

Neighbor

gene id symbol gene type direction distance location
LOC110492331 LOC106566684 coding downstream 9669 55375735 ~ 55383021 (-)
actr8 actr8 coding downstream 20395 55350144 ~ 55372295 (-)
sema3b LOC106566773 coding downstream 137338 55166763 ~ 55255352 (-)
si:dkey-20d21.12 LOC106566776 coding downstream 434701 54946478 ~ 54957989 (-)
LOC110491107 NA coding downstream 751976 54639471 ~ 54640714 (-)
LOC110492334 dkga coding upstream 138553 55568377 ~ 55582222 (-)
LOC110492337 sgk2 coding upstream 165745 55595569 ~ 55607324 (-)
LOC110492338 LOC106566690 coding upstream 179363 55609187 ~ 55626735 (-)
LOC110492341 LOC106571981 coding upstream 197091 55626915 ~ 55632905 (-)
LOC110492339 rae1 coding upstream 203990 55633814 ~ 55638471 (-)
G1390371 NA non-coding downstream 46629 55345795 ~ 55346061 (-)
G1390350 NA non-coding downstream 74715 55317667 ~ 55317975 (-)
G1390346 NA non-coding downstream 75831 55316600 ~ 55316859 (-)
G1390312 NA non-coding downstream 103709 55288711 ~ 55288981 (-)
G1390303 NA non-coding downstream 116888 55275581 ~ 55275802 (-)
G1390692 LOC106597055 non-coding upstream 32227 55462051 ~ 55462661 (-)
G1390752 NA non-coding upstream 99883 55529707 ~ 55530272 (-)
G1390754 LOC106566686 non-coding upstream 103379 55533203 ~ 55533715 (-)
G1390756 NA non-coding upstream 106915 55536739 ~ 55536983 (-)
G1390755 NA non-coding upstream 107367 55537191 ~ 55537704 (-)
G1390030 ifrd2 other downstream 406427 54984818 ~ 54986263 (-)
G1389763 NA other downstream 847447 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1659775 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2359769 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 2820383 52566433 ~ 52577143 (-)
LOC110492352 nua4l other upstream 394335 55824155 ~ 55826646 (-)
G1391586 NA other upstream 634679 56064503 ~ 56064862 (-)
G1391624 NA other upstream 795590 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 851228 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 994448 56424272 ~ 56437279 (-)

Expression


Co-expression Network