G1390508


Basic Information

Item Value
gene id G1390508
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55628694 ~ 55632838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1588061
TTTGCAATATACCACACtgcctcaggccttattgcttaaatataagtGTTCCCTCAACTCACCTTCAGATCCTGCCAGCTGCAGCGGCTGGACAGATTCTCAACGATCAGTCGGTACTCAGTACGGACGGGTGGCCCGTACTTATCCCTGCCAGTGCGGCTTCTGCTGCTGCTGTAACCACTACTACCTTTAAATGACAGGACAGACAAATTGTCAGAAAAACAGAGTGGCTTATAGGCATTTCACTTAATGGATCAGACCATGAACAGAGAATGCAACTACCAGAATAAAAGGTGTGGTATGTTTAATATAGGTCCTGTGAGATGTCCATCTGGACCCAGTCTCAAGACAAACCTAATTAAGTGACTGAGGTATTAAAGCTGTGGCATTTGTTGGCTTAGTGGCTGTACATTTTTATTCTCCTCACTGTACAGCCTCTGTAGTTCATTGCTGTGCAAAGAACACCACTGCATCTGTTATCAGCAACATACAGCCAGTCTGACAAATGTTTAAAAACCACAAATCTTTAGCAGTATAAACAAATGGACAGTGATGTTCTTCTTACAAACTCTTGAATCCTGAAAGACAAACAGAGGCTTCCACAAAGTCAATGTCAAAAACTTGTAGCACATTTTGCAAGAGTGCCAACTGACATATCTCTACAAAGGTTTTACCCCATGACATAGCCTAACCGGTTGTCAAACTGGGGACAATGCAGTTGCTTTGCCTGCTTTACAGGGAAAGGTAACATGTTGACTTAAAGCCGTCCCACTTATTCTTTCAACATAGAAACCAATGGGAATCCTCACCATCACCCCTGGTCTATTGGAAAAAGGATGATGTCATCAAGGCTTCCGGTTAGGTCAGCCAAGGGTCAAGAGGCATAGGTCACACACACATTGTAAAGGTGAAAGCCAAGGCCAAACGGGACAGGCAGTCATCTTAGCCTCAATGGACTCAGCCTCAGCCCGCAGCTGGACTCTTTCAAATTGAAACATCAAGGACTTTGTTAATGTTGAAATCAAAACGCAAAGACAATTCACATGTAATGGTATTTCACGGTACAGCTGGGCTACATGGTGACAAAGTCGTGACTTCTTAACTAAATACAGTTGTTTATTGGTGTTCACAATTCCACCAGGAAGAAAACACTAGAAACATGGTTTCACTACACCTAAACAATCAGTAGCAGTAATCTGAGGTCTGCTCTGAGTTGGGTCAAACTTGTACCATACTCAATGGTGACACTATggaaatggtgacatcattgagtaTTGGCGAGTTATGTCAAACTCCACTTCAGGATCACAGGCCTGTGTGTGTACGGTCCACATTCACATCTCCTTGACCCATTGGGAAAAGGGTGACGGGAACATTGAAATACATTGCACTTACTGCGACCACCACCCCCGCCACCACCATATCCATCTCGGTCACGGCGCGGTCCTCTGGCATGTTCCACGGTCACACGCTCCCCGCACAACTCCTTGCCATTCAGTTCATACACTGCGTCGTCCGCATCGCGATTATCCTCAAATTCTACAAAGCCATATCTATTTTCAGATCAATTTCCATAAGCTTTCCGTAGCCATTGAAAAATCTTTGAAGGTCTTTTTCTCGAGCATTATAATTAAGTTTTCCAACATAGATGCGAGGCATGATTAATGATCCTCGCACAAAATATCGTAATCAAAAGA

Function

NR:

description
serine/arginine-rich splicing factor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1588061 True 1697 TUCP 0.44 2 55628694 55632838
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110492335 catsperd coding upstream 33204 55582117 ~ 55595490 (+)
LOC110492333 LOC106566687 coding upstream 64394 55539306 ~ 55564300 (+)
LOC110492332 LOC106566686 coding upstream 92956 55516905 ~ 55535738 (+)
sema3bl sema3g coding upstream 489591 55072237 ~ 55139103 (+)
LOC110492913 NA coding upstream 636345 54989353 ~ 54992349 (+)
LOC110492343 LOC106566691 coding downstream 21162 55654000 ~ 55661738 (+)
LOC110491113 LOC106566694 coding downstream 76429 55709267 ~ 55740977 (+)
LOC110492345 prelid3b coding downstream 115092 55747930 ~ 55750490 (+)
LOC110492349 LOC106566696 coding downstream 160177 55793015 ~ 55794747 (+)
LOC110492351 NA coding downstream 178394 55811232 ~ 55823631 (+)
G1390518 LOC106566690 non-coding upstream 10682 55617337 ~ 55618012 (+)
G1390499 NA non-coding upstream 49024 55579459 ~ 55579670 (+)
G1390492 dkga non-coding upstream 56521 55570377 ~ 55572173 (+)
G1390480 NA non-coding upstream 60896 55566863 ~ 55567798 (+)
G1390479 NA non-coding upstream 62400 55565560 ~ 55566294 (+)
G1390530 NA non-coding downstream 12334 55645172 ~ 55645435 (+)
G1390561 NA non-coding downstream 65094 55697932 ~ 55698165 (+)
G1390568 NA non-coding downstream 72730 55705568 ~ 55705858 (+)
G1390577 NA non-coding downstream 83307 55716145 ~ 55716370 (+)
G1390579 NA non-coding downstream 84700 55717538 ~ 55718036 (+)
G1390473 NA other upstream 99046 55528593 ~ 55529648 (+)
G1390386 LOC106566684 other upstream 247334 55364468 ~ 55381360 (+)
G1390376 actr8 other upstream 276965 55351200 ~ 55351729 (+)
LOC110492320 LOC106566780 other upstream 846346 54769016 ~ 54821566 (+)
G1388919 LOC106566792 other upstream 1321786 54306450 ~ 54306908 (+)
G1390527 NA other downstream 7184 55640022 ~ 55640299 (+)
G1390616 LOC106566696 other downstream 160186 55793024 ~ 55823192 (+)
G1391254 NA other downstream 613677 56246515 ~ 56247620 (+)
LOC118939462 LOC106566730 other downstream 1147223 56779988 ~ 56790929 (+)
G1392601 NA other downstream 1733113 57365951 ~ 57366517 (+)

Expression

G1390508 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1390508 Expression in each Bioproject

Bar chart with 18 bars.
G1390508 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G128412 NA non-coding NC_035911.1 CM008314.1 762633 ~ 881929 (-)