G1390841 (LOC106613263)


Basic Information

Item Value
gene id G1390841
gene name LOC106613263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55715242 ~ 55715658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1588431
gtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgtcctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccctcataccaccctcatggagtctgtttctgaccgtttgagcagacacatgcacatttgtggcctgctggaggtcattttgcagggctctgtcagtgctcctcctgctcctccttgcacaaaggcggaggtagcggtcctgctgctgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttcttgccacagctcacattgatgttccatcc

Function

NR:

description
PREDICTED: uncharacterized protein LOC109523355 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1588431 True 417 lncRNA 0.57 1 55715242 55715658

Neighbor

gene id symbol gene type direction distance location
LOC100170209 LOC100170209 coding downstream 22430 55671464 ~ 55692812 (-)
LOC110492342 LOC106566692 coding downstream 65827 55646145 ~ 55649415 (-)
LOC110492339 rae1 coding downstream 76771 55633814 ~ 55638471 (-)
LOC110492341 LOC106571981 coding downstream 82337 55626915 ~ 55632905 (-)
LOC110492338 LOC106566690 coding downstream 88507 55609187 ~ 55626735 (-)
LOC110492344 NA coding upstream 26610 55742140 ~ 55745483 (-)
LOC110492346 bpi coding upstream 39472 55755130 ~ 55769029 (-)
LOC110492348 viaat coding upstream 68150 55783808 ~ 55787739 (-)
LOC110492352 nua4l coding upstream 108497 55824155 ~ 55826646 (-)
LOC110492353 nua4l coding upstream 129027 55844681 ~ 55847496 (-)
G1390818 NA non-coding downstream 47599 55667128 ~ 55667643 (-)
G1390817 NA non-coding downstream 48370 55666507 ~ 55666872 (-)
G1390797 NA non-coding downstream 101275 55602174 ~ 55613967 (-)
G1390777 NA non-coding downstream 134341 55580207 ~ 55580901 (-)
G1390772 NA non-coding downstream 139939 55574956 ~ 55575303 (-)
G1390845 NA non-coding upstream 3874 55719532 ~ 55719754 (-)
G1390850 NA non-coding upstream 11857 55727515 ~ 55727835 (-)
G1390853 NA non-coding upstream 14048 55729706 ~ 55729927 (-)
G1390854 NA non-coding upstream 15147 55730805 ~ 55731077 (-)
G1390855 LOC106566694 non-coding upstream 15580 55731238 ~ 55731490 (-)
G1390030 ifrd2 other downstream 728979 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1169999 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 1982327 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2682321 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3142935 52566433 ~ 52577143 (-)
G1391586 NA other upstream 348845 56064503 ~ 56064862 (-)
G1391624 NA other upstream 509756 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 565394 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 708614 56424272 ~ 56437279 (-)

Expression


Co-expression Network