XLOC_032920


Basic Information

Item Value
gene id XLOC_032920
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30452287 ~ 30459015 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065178
gtttttttCAAAAGGCAGCGGGTATTTTATAGACAAGCACTGGAATAAAATTATATAGTTTAGGCAAGTCTCTGATATTCTTCAAACAACAGAATACTTAGTCAGCTCTAACTCTGAAGTTACAATGCATTTTAAGGTGATATACACATCTATAAAAAGCGTGCAGACTAAAGTGGTAGTTCGCCTGGctaaaaataaagtgaaagagTACAATCTTAGCCTGCACTAGTTATATACAAAGATTCAAAAGgctaaaataaattactaaaaaatatcaatgaattatttttttaacaggacCAGGATGGTGACACAAGTCATTTGAAATAATGCACCACCAAAATCTCATTTTCAGAAGTTAATTACAACCTCCTGGTGTAAATAGCAACACAACTTGCATGTGCAAAGCTTGGATGGAAAATGAACGGAACTGAGATTTGAAGATTTTCTATTGGGATTCAGGTCTTtcactgccctctagtggtttAAAACAAGAATAAGAGTTCACGTGGATCCAAAAAACGTCAAGGAATTGAATGAAAGGTGtttaaaaatgatgatgatgattattatgattTCGCCATATAATTTTATGGGTCGTGTAACATTAAAGGTTTACGAACGCATTAAAATCACTATAGAGGATAACAACGACTTTCTATAAAATCAGGTTTGGTCAAATCATGATGTGAACATCTGAACATGCCCAGCACTTTCAGGATCTTCACAAGTCTTGCCAAAATGTCTGAGGCAGTAAAGGAGTACTCAATATATGACCTGAATGCAATTCCGCTGGCAGTAAGTGGACCACATTATTAAGTACTGCTTTGGAATCCTAGGCTGACGTCAAGAGAGACTGGCTCTAGATCAGTGTTTATTAATCAGTCAGTTGATTATTCTCTGGTCCATTGGGAGACTGTCCATCAGACACTTGAGCTGCTCATCTCCCAGTTTGATCTTGTCCTCCAGCTTGCGTTGCTCGATAATAAGAGCGGATTTCATCTTGACAAAGTGCTCGTAGTCAGCCATACTCTCCTCAGGCAGGTAACTGGCCAGAATGTCGTAGACCACACGCTCTCTCCTGTCCAGGTTCTCCTTCAGCTCCTTAGCATCCTCGTGCTGACGAATCAGCAGTTT
>TCONS_00065179
ttttatttCAAAAGGCAGCGGGTATTTTATAGACAAGCACTGGAATAAAATTATATAGTTTAGGCAAGTCTCTGATATTCTTCAAACAACAGAATACTTAGTCAGCTCTAACTCTGAAGTTACAATGCATTTTAAGGTGATATACACATCTATAAAAAGCGTGCAGACTAAAGTGGTAGTTCGCCTGGctaaaaataaagtgaaagagTACAATCTTAGCCTGCACTAGTTATATACAAAGATTCAAAAGgctaaaataaattactaaaaaatatcaatgaattatttttttaacaggacCAGGATGGTGACACAAGTCATTTGAAATAATGCACCACCAAAATCTCATTTTCAGAAGTTAATTACAACCTCCTGGTGTAAATAGCAACACAACTTGCATGTGCAAAGCTTGGATGGAAAATGAACGGAACTGAGATTTGAAGATTTTCTATTGGGATTCAGGTCTTtcactgccctctagtggtttAAAACAAGAATAAGAGTTCACGTGGATCCAAAAAACGTCAAGGAATTGAATGAAAGGTGtttaaaaatgatgatgatgattattatgattTCGCCATATAATTTTATGGGTCGTGTAACATTAAAGGTTTACGAACGCATTAAAATCACTATAGAGGATAACAACGACTTTCTATAAAATCAGGTTTGGTCAAATCATGATGTGAACATCTGAACATGCCCAGCACTTTCAGGATCTTCACAAGTCTTGCCAAAATGTCTGAGGCAGTAAAGGAGTACTCAATATATGACCTGAATGCAATTCCGCTGGCAGTAAGTGGACCACATTATTAAGTACTGCTTTGGAATCCTAGGCTGACGTCAAGAGAGACTGGCTCTAGATCAGTGTTTATTAATCAGTCAGTTGATTATTCTCTGGTCCATTGGGAGACTGTCCATCAGACACTTGAGCTGCTCATCTCCCAGTTTGATCTTGTCCTCCAGCTTGCGTTGCTCGATAATAAGAGCGGATTTCATCTTGACAAAGTGCTCGTAGTCAGCCATACTCTCCTCAGGCAGGTAACTGGCCAGAATGTCGTAGACCACACGCTCTCTCCTGTCCAGGTTCTCCTTCAGCTCCTTAGCATCCTCGTGCTGACGAATCAGCAGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065178 False 1137 lncRNA 0.39 2 30452287 30456089
TCONS_00065179 True 1137 lncRNA 0.38 2 30452287 30459015

Neighbor

gene id symbol gene type direction distance location
XLOC_032919 FP236850.1 coding downstream 230317 30221834 ~ 30221970 (-)
XLOC_032917 lrrc7 coding downstream 241909 30124197 ~ 30210378 (-)
XLOC_032918 FP236850.2 coding downstream 249250 30202921 ~ 30203037 (-)
XLOC_032916 NA coding downstream 366685 30083946 ~ 30085602 (-)
XLOC_032915 NA coding downstream 591435 29851193 ~ 29860852 (-)
XLOC_032921 zgc:153311 coding upstream 24990 30484005 ~ 30485009 (-)
XLOC_032922 lurap1 coding upstream 166930 30625945 ~ 30658848 (-)
XLOC_032923 ttc4 coding upstream 217980 30676995 ~ 30683637 (-)
XLOC_032924 pars2 coding upstream 225681 30684696 ~ 30689126 (-)
XLOC_032925 sgip1a coding upstream 250911 30709926 ~ 30839763 (-)
XLOC_032914 NA non-coding downstream 603440 29846493 ~ 29848847 (-)
XLOC_032927 CR847887.1 non-coding upstream 610515 31069530 ~ 31147255 (-)
XLOC_032933 NA non-coding upstream 1286276 31745291 ~ 31749784 (-)
XLOC_032940 NA non-coding upstream 1736793 32195808 ~ 32196825 (-)
XLOC_032944 NA non-coding upstream 1956061 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 2114981 32573996 ~ 32592792 (-)

Expression


Co-expression Network