XLOC_032921 (zgc:153311)


Basic Information

Item Value
gene id XLOC_032921
gene name zgc:153311
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30484005 ~ 30485009 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063954
AGCTGATGAGTGCCTCTTACTGAAGTCTGACGGACTGTGAAGGACTTGCCTTGTCAGAAGAACTCTGCAAGATCACACCCGAGGTGCTGCTTTTGGTCTTTCCACGCTTTCCTCCTCTATCCCTCACTCATTTCTCTTATCGAGAGGAGGCTCTTGAAGCACCAGACAAACCTGAAGGCCGTCGGACCCCAAGGGGACACGGTAGCCAGAGGAGACCATGACAAACCCTTGCACGGTGGCTCTGGAACTCTTTGGGATGCTGATCGGGGCAGGAGGCTGGTTCTGTTCACTGGCCGCCACCATCATGCCTCAGTGGCTGTCACGTTCAACTGAACTGTTCGCCACAGAGAGCTTTGAACAAGGGCTTTGGGAGGTCTGTGTGATCCAGGAAGTGGCTGGCATGGAGTGTCGTCCCTATGACACCATCCTAGGTCTTGACCCCACTGTGATGCTGGCACGAATTCTGATGTGCATGTCGAATGCCACTGGGCTCCTCGGGATTCTCCTCGCCATCCCTTCCATGAGTCAGATCAAGTGCTGTAAGGGCGAGGAGGGACGCAAGACCAAGAGAGGGCTGAAGATCTCAGCTGCCGTGTTTTTGTGCATCGCCGGTTTGTTGGTTCTCACTCCAATATCTTATGTTGCTCACGATACAGTGATGAGATACTTCGATGAGAGTGTGCCTCATGTGGTGCCGCGCTCTGAGTTTGGGGATGCGCTGTTCATTGGCTGGTCTGCAGGACTTCTTTACATTGTGGCATCCGTGCTGTTGTTTGCCTCTTGCACTGACTCAGGAAACAGTGAGCCGCACTTGGTGTATCACCATCGAAGGCAGGATACCAGAACTTTGGATAGATCAGGAAAACGCACCGAGTACGTTTGAGACGATTCTCACTGTCTTAAAATCCCTGttgatatttctttttaaagaaattttaaaattcttttaagAACTTTTAACATTCAATCATAATAAAGGACTTTCTTATGATGCATTTATCCTTC

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-194 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain; gill; integument; and testis.

Ensembl:

ensembl_id ENSDARG00000015964

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063954 True 1005 mRNA 0.50 1 30484005 30485009

Neighbor

gene id symbol gene type direction distance location
XLOC_032920 NA coding downstream 24990 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 coding downstream 262035 30221834 ~ 30221970 (-)
XLOC_032917 lrrc7 coding downstream 273627 30124197 ~ 30210378 (-)
XLOC_032918 FP236850.2 coding downstream 280968 30202921 ~ 30203037 (-)
XLOC_032916 NA coding downstream 398403 30083946 ~ 30085602 (-)
XLOC_032922 lurap1 coding upstream 140936 30625945 ~ 30658848 (-)
XLOC_032923 ttc4 coding upstream 191986 30676995 ~ 30683637 (-)
XLOC_032924 pars2 coding upstream 199687 30684696 ~ 30689126 (-)
XLOC_032925 sgip1a coding upstream 224917 30709926 ~ 30839763 (-)
XLOC_032926 pde4ba coding upstream 366536 30851545 ~ 30954268 (-)
XLOC_032915 NA non-coding downstream 623153 29851193 ~ 29860852 (-)
XLOC_032927 CR847887.1 non-coding upstream 584521 31069530 ~ 31147255 (-)
XLOC_032933 NA non-coding upstream 1260282 31745291 ~ 31749784 (-)
XLOC_032940 NA non-coding upstream 1710799 32195808 ~ 32196825 (-)
XLOC_032944 NA non-coding upstream 1930067 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 2088987 32573996 ~ 32592792 (-)

Expression


Co-expression Network