G1390888



Basic Information


Item Value
gene id G1390888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 55798217 ~ 55804675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1588480
tccgtcactcctcagcaggtcaggcttggtcctgtttgtgggtgagtcccagaaagagggccaattatctacaaattctatcttttgggaggggcagaaaactgtCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGAAAAAAATGCTCCCTGTTGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCATCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGATCCATTGTCTATCTGTGGGGTAAAAAATGTTCCCTGTTGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCTTCCCCTTTGGACCTGCTCCATTGTCTATCtgtggggtaaaaaaaaatgctCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCtgtggggtaaaaaaaaatgctCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTACCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTCTCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGAAAAAATGCTCCCTGTTGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCATCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGAACTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGAAAAAAATGCTCCCTGTTGTCCCCTTTGGACCTGCTCCATTGTCTATCTGTGGGGTAAAAAATGCTCCCTGTCGTCCCCTTTGGATCTGGCTGAAAGCCTTGTACAGTAAAGGATCACTGGATGTTTATCATGCTGTAATAACCATTTATTTGACTTGTGGTTCTACGGCTGCAAAGGtcataatacttcctgttgaacAACTAGTTAACCATCGTTTTTGGTTCTGAGGTTGTTCCTTGTGTGTTCTGAGAAGATATACATGTGATTGCACTTGTTCCTCTCCACCGTAGATCAGTCCTCTGGGATAATTGTGAGGGCTTGTTAATGCATCTGATCATAATTTAGACACTTTATTGGGTTGGGTTCATCCAAGTCAGACTCGGTGTCTGCAAATGCCTGTAAATCCTGTGCTGAGACAGATGTATGGCTGGCTGTGCCCTCCTGCCACTCCTGTGTGGTGAGTGTATTTACAGATGGAGTTGCCCTATGATGCTGCCAGCTGTACAATAACCATTCAATCAATCATATCTCCGTTATTCTCCTCCTTCGACAGGTTCCAAACCTGCTGGGGCAGACTAGCACTGCTGTGTTTATCTCTATAACAAAAAAGCTGTGGAGTAATACCACCTTGTGGCATAATGGTGTACTGCACCTCTTTAATCTAGATAGCACATACAATAAAGAGGAACTTGAAAGTCTTACACAGAACATTGTCCCTAAATATACAGTGTGTTTTTGTGATATTTGACAGCAAATGCCTGCTTGTGGCAtctagatgtttttttttacaacataTCCTTGAATGAATCTTGAACAAAGCTTGATTGCATTATAAAAACGGCACAAGTAAAACCACCAATTTTACTTGTGATGAAGTATAAAAAAGGACTAACACAATCAAACAGCCCAATGTCTTCAGACAGGTCTGTTGTAGTAACCATTCAATAAGAGTGGTCCATTGGTCCATCATCATCTGTGCTGCTATGAAATCCCAAAATGCACAGCAccatgatatacagtgcattcggaaagtattcataccccttggctttttccaccttttgttatgttacaaccttattctacatttgattaaataaaacattttcctcttcaatctacacacaataccccatcatgacaaagagaaaaacgttttttagaaatgttttttttttttaacaaataccttatttacataagtattccgaacttttgcgatgagactcgaaattgagttcaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattagagtccacctgtggaaaattcaattgattggacatgatttggaaaggcacacaccagtctatataaagtcccacagttgacagtgcacgtcagagcaaaaaccaaagccatgaggtcaaaggaatcgTCTGTAGAGcgccgagataggattgtgttgagctacagatctggggaagggtaccaacatttggaggagagagtcagaaggagaggagagagtcagaacagGGGTTTACTATGCTGCTCAAGTAAGTGTAATATGGCCCTCTCCTTAGCACCATATTGTTTAAATTAAAACTTGTACAAGTCACTGAGTATTTATACTGCTGGTATATAATATTATTGCACTACCTTCATCCCAACCTTAaccactacatgaccaaaagtatatggacacctgcttgtcgaacatctcattccaaaatcatgggcattaatatggagtttgttcACCCTTttctgctgtaacagcctccgctcttctgggaagactttacactagatgttggaacattgctgcagggacttgcttccattcagccacgagcattagtgaggtcggggactgatgttgggagattaggcctggctcgcagtcggcgttctaattcatcccagaagtgttcgatggggttgatgtcagggctctgtgcaggccagtcaagttctcccacaccgatctcgacaaaccatttctgtatggacctcactttgtgtacgggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaattgtctagaattgtctagaattgtctagaagatgaatgtgcaagtagagatactggggtgcaaaagagtaagataattaaataaatacagtatgtggatgaggtagttggatgggctatattacagatgggctatgcacgggtgcagtgatctgtgggagatatgagtctccagtgattttttatatattttttaacattttgtttTCTTTCAGTTTGTTCCAGtaatgggcagcagagaactggaaggaaaggcggccaaagtagggattggctttgggggtgaccagtgagacatacctgctggagtgcgtgctacgggtgggtgctgctatggtgaccagtgagctaagataaggcgGGGCTCCAGGCGGGACCTGGAGcctgtgggtttggcgacgagtatgacgcgagggccagccaacgagagcgtaaaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagactgcatccaatttgttgagtagggtattggaggctattttgtaaatgacatcaccgaagttgaggatcggtaggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcaaaataggaatccgattctagatttcattttgaattggagatgcttaatgtgagtctggaaggagagtttagtctaaccagacacctaggtatttgtagtgcTGGACGggagggcaggtgcgggcagcgatcggttgaagagcatacatttagtttaccttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagcttgtctggaggttagttaacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcgtagaggcggatcagagaatcaccagcagcaagaattgaaccctgtggcacccccatagagagtgccagaggtccgaacaacaggccatccgatttcacacactgaactctatctgagaagtagtttgtgaaccaggcgaggcaatcatttgagaaaccaaggctgttgagtctgccgataagaatgtggtgattgacagagtcgaaagccttggccagatcgataaacacggctgcacagtaatgtctcttatcgatggcggttatgatattgtttaggaccttgagcgagACTgcggtgcacccatgaccagctctgaaaccagattgcatagcggagaaggtacagtgggatttgaaatggtcggtaaatctgtttgttaacttggctttcaaagaccttagaaaggcagggtaggatagagataggtctgtagcagtttgggtctagagtatctccccctttgaagagggggatgaccgcggcattTTTCCAATCTCAGAAAATACGATCTCAGAaaatacgaaagaggttgaacaggctagtaataggggttgcaacaatttcggcagatcattttagaaagagagagtccagattgtctagcccggctgaatTGTAAggttccagattttgcagctctttcagaacatcagctatttgggtgaaggagaaatgggggaggcttgggcgagttgctgtggggggtggagggctgttgatcggggtagCCAGGTTGAAAGCAtaggccagccgtagaaaaatgcttattgacattctcaattatagtggatttatcggtggtgacaatgtttcctagcctcagtgcagtgggctgttgggaggaggtgctcttattctccatggacttcagtgtcccagaacttttttgagttagtactacaggatgcaaatttctgtttgaaaaagctagccttagctttcctaactgcttgtgtatattggttcctaacttccttgaaaagttgcatatcacgggggctattcgatgctaatgcagtacgccacaggatgtttttgtgctggtcaagggcagacaggtctggagagaaccaagggctatatctgttcctggttctgaatttcttgaacggggcatgcttatttaagatggtgaggaaggcacttttaaagaataaccaggcatcctctactgacgggatgaggtcaatatccttccaggatacccgggccaggtagattagaaaggcctgccccctgaagtgttttagggagcgtttgacagtgatggtcgtttgaccgcagacccattacggatgcaggcaatgaggcagtgatcgctgagatcttggttgaaaacagcagaggtgtatttagagggcaagttggttaggatgatatctatgagggtgcccgtgtttacggatttggagttgtacctggaaggttcattgataatttgtgtgagattgagggcatcaagcttagattgtaggatggccggggtgttaagcatgtcccagtttaggtcacctagcagcaagAGCtatgaagatagatggggggcaatcaattcgcaTATGGTGTCCAGTGCACAACTGGGGGCAGGgggggtctatagcaagcggcaatggtgagaaATTTGTTTCttgaaaggtggatttttaaaagtagaagctcaaaatgtttgggtacagacctggatagtaagacagacctctgcaggctatctctgcagtagattgcaacaccgccccgtttggcagttctatcttgtcggaaaatatTACTAgctagggatggaaatttcagggtttttggtggtcttcctcagccaggattcagacacagctaggacatccaggttggcagagtgtgctaaagcagggaataaaacaaacttagggaggag

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1588480 True 6239 lncRNA 0.46 2 55798217 55804675

Neighbor


gene id symbol gene type direction distance location
LOC110492348 viaat coding downstream 10478 55783808 ~ 55787739 (-)
LOC110492346 bpi coding downstream 29188 55755130 ~ 55769029 (-)
LOC110492344 NA coding downstream 52734 55742140 ~ 55745483 (-)
LOC100170209 LOC100170209 coding downstream 105405 55671464 ~ 55692812 (-)
LOC110492342 LOC106566692 coding downstream 148802 55646145 ~ 55649415 (-)
LOC110492352 nua4l coding upstream 19480 55824155 ~ 55826646 (-)
LOC110492353 nua4l coding upstream 40010 55844681 ~ 55847496 (-)
LOC110492354 LOC106566769 coding upstream 80708 55885383 ~ 55888359 (-)
LOC110492355 LOC106566701 coding upstream 91511 55896186 ~ 55908040 (-)
LOC110492359 LOC106566705 coding upstream 150365 55955040 ~ 55965473 (-)
G1390876 NA non-coding downstream 16336 55781529 ~ 55781881 (-)
G1390877 NA non-coding downstream 16817 55781246 ~ 55781400 (-)
G1390873 NA non-coding downstream 21135 55776153 ~ 55777082 (-)
G1390863 NA non-coding downstream 50728 55747048 ~ 55747489 (-)
G1390862 NA non-coding downstream 51702 55746277 ~ 55746515 (-)
G1390893 NA non-coding upstream 6970 55811645 ~ 55813087 (-)
G1390914 NA non-coding upstream 43485 55848160 ~ 55848387 (-)
G1391086 LOC106566702 non-coding upstream 108962 55913637 ~ 55915767 (-)
G1391097 LOC106566704 non-coding upstream 125331 55930006 ~ 55933691 (-)
G1390030 ifrd2 other downstream 811954 54984818 ~ 54986263 (-)
G1389763 NA other downstream 1252974 54544728 ~ 54545243 (-)
LOC110492299 LOC106566805 other downstream 2065302 53730164 ~ 53757019 (-)
G1388236 NA other downstream 2765296 53031932 ~ 53032921 (-)
LOC110492250 LOC106566852 other downstream 3225910 52566433 ~ 52577143 (-)
G1391586 NA other upstream 259828 56064503 ~ 56064862 (-)
G1391624 NA other upstream 420739 56225414 ~ 56226061 (-)
LOC110492371 adcy6 other upstream 476377 56240763 ~ 56293503 (-)
G1391796 LOC100286403 other upstream 619597 56424272 ~ 56437279 (-)

Expression



Co-expression Network