XLOC_032922 (lurap1)


Basic Information

Item Value
gene id XLOC_032922
gene name lurap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30625945 ~ 30658848 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063955
GCAGTAATCTCTACGCTCGCGTTTACTCGGTTATTTACGGTATTCAACTTATGCGCTCTGCTCGCTGTCATGCAGGTGGAATTCAGTCAGTTCAGCCGTATGATTTAAGCTTCACGTCAGTACAGCCGTTCAGCTTGAGCTCCGATCCAACCCTGACTTTATATCCGTGCACAACATCCACACTTCACCTCAGCACAGCGATGGCATCATCCGCACAGAGAGTATAGAGCACGTAGATCTGAAGCGTTTTAACGACGATCTTCCGAGAGACGCGCATCATGCTCAGGTGGTCCGTGTTTCCCACCGAAGAAGGAGATCATTCAGACTGCGTTCGGGAGAGAAAACAGTCGTGTGAATGTTCAGAATATTAATCAGGTATGTTAATGTATTGTATGATGATATGCAGCTCGTTTAGCGCATGTGGTGTGTTTTTCCGATCATATGCGGATTTTAGCTGTAACGCAGAATGACTGTCATGTGTTTACAAATAACCACAATGTTACATAAGACTTTTGAGGCATAATAAAGCAAATATCAGCGGGGCGCAAAATAAAACtttcaataattaaaattttccttcttttttactcattttcttcttttcttttatgTAGACCCGTTTTCTAATCATGGAGGAGAGTAATAATACCTGTGAGTCAGTTCCTGATTTGAAAGATCTGGAGTTGAAAGTGGGTAGAAAGACCCCAGAAGGGCTCCTGAAGTGGATGAGAGAAGAGCACAAGATGATCTCTCATCATCAGACTGACAATAATGAGACTGAGAAGAAAGGTCTCGATGGGAAGATACGAAAACTTAAAATGGAGATGGCTCATCTACGAGCAGCAGATGTCAAAATCTTGAACCAGTTGCTAGCACTGCATGAGGGTATCGAGGCAGTGAAATGGCTTCTAGAAGAACGTGGCGCTCTCACCAGCCGCTGCAGCAGCCTGACCAGCAGCCAGTACAGCTTAGGGGAGGGTCCTGACACGTCCTGGAGAGGCAGCTGGAGCAGTCTGCAAGATCCCCATGACAAGCTGGACAACATTTCCATCGGCAGCTATCTGGACACATTAGCTGATGAACTGGATGAGTACTGCCCTTCCAGTGGGACTGAGTCAATACTCTGTGCCACTCCTATGGGGACTGGAGGAGGGGTCAGCAGTTCCACTGGATCTGGAAGCAGACCTCCTCAAGTCAAAACAGATGCCACTAAAGAAGAAGCTCAGGTTTGGAATAAAGCACCGTCTGAGACAGCGAGAGTTAACAAGACCAATGGAACCCTGGACAAAACAGCGACTCAATTGGTCAGCTCAGATTCGCCCAGAGCTTGTCTCGCTGAGAAGCTTGGGAAGAATCTGAGCCCTAAAGTCAAACCATACAAAAATGGCAAGGTTGAGCTGGAGAGCTGTAAAAAGAATGGCAAAGTTCAACTGGAGTACGATGCACACTGGCGTTGGGTTCAGTCGCAGGATGATGTAACGTTTTTGTGATAGCATACACGATTGCTCAGCCAAAGCTGGGAGATTGGGGTTTAAACACTGAGGTTTTGTTTGCCGACTTTCATCTTTGATTAATGTGAGGCCAGATTCTCAGGTCTCCTttaaataacagaggttaaaCGTTAACAACAGGAAAGAATAAGAAATGGAAAGAAGCTTAAACGTGTGAATTCAGAGTTTAAAAAGCCTGAATTAGTGGTTGTTAGATGTGTATGGACGCATGTTTTCTGTgtgcatttcagtttttttttttttggcattgatTGATTCAGCAAAGCTATTTATTAATTAGTCATTAATCCTTTATTGCATATTCAgtgcaaacattttatttgaattacaATGATGTAATTGCAAATTGGTGTGCTTGCAAATCAACTTTTTGTAGTATATTTACATTGGCATACAGAACTGCGGTAcagaccaattaaaaaaaaaaactttgaatatcttttagggtgctttcacactagcacttttggccCGCACCCGGGTTCATTTAGCATCAGAGTATgatacgtttagctagtgtgaacgcgTCTTCTGAACTATACTCGAGTCCCGCCTTAAAGAGCTAGTCTGCGGTACGGTTCAAGCAAACTTTGGTCCTGTTCACTTCTGGTTtcaatgcaatcgtaccaaataacggaagtgaaccgccaactgtacaacaaaccatcattttcataacgttcatttgtgtgtgtgtatgtgtgtgtgtgtgtatctgtgtatcAGAtactgtaccttggtgacaagtgGGACTGAGCCATTTtatggaaaggtctgtatgtgtgaacagtaGTGATGGCTGACATAAACTGACGTtgcgacacagtgtcgagatcccgaagtgcaagtgtttcgaaacactgcaccgaagcatgatctaaaacacccaagtcacgtgactaaagtgtttcgaaaaaATGGTtacgtgactaaagtgattcaaagcaCCGATCAGTTTAGATgtgtttcgagacctggcgaatgtgcatttgactgacagggtcagaAAACTGTGCATCAAATGACTTTTGGGTTCAAATCCCGATTTGTACAAATACTCAGAAATCatggttttatatattttaatcatatttctgttttatggtgtagtctagacaggatacagctgcggatacgccatatatttagcatcattttttgttacactgtaaaacaataattcatatttttacagtactgtgatggttgggtttaatttaatgattaatattaataattcttgttaacatCTGGCCACAAGtgtgtctgatctagcaacaaccctgttttatgaccaaaacaagacatatttattcacagtgTTTATTTGGATGTCAGActaatgttgaaacaaaacgatacaagaacaaGCATTTCAAACtgatattaaagcatttcaaaatagctgTATCGACTTGGATTTGAACCCAGTTTCCCCACTTGGAAGTCGGAAACCTTAACCACTCCACTAAACCACTTGAAGGTATAATTCTACAAAATGGGGTCTAataatttgctcaactgttctgtGCCGAAGTTGTTTcagtgcaataaataaaaaatgaccactaggtgtcccCGTAGAGTGGGGTTTTGAAAAGTTTCGAagctttgacacatttgcttcgactgtttcagggtttcatgaagcctcgcgtTGCCCTCCACTAGTGAACGGGCCCTTTTTGAAAacaccggtaaatttgttctggctattttacaaaaaaagagaagttgtaacattaccagtaatttgccgcAATGTTAcgctgtgtgaacacagaaggaaaattgccagaaagagCGCATTCACGTCTAGAACGCACTTGAGACGTCtaactttagccaatcagaacactcagacgtaTTCACGTCCAcacagtttataaaaataaaagcctttgaatatttttccagtcacatttagctgctagatgtaagtcagataacatttctatgtttcttcttaatgccaactgtgtaaaaaactatcgataaaatgcttatgataggCCGTTGTTTGCTCTGACGTGTGTatgtgaagcagccggtgagcgtcagcacacacacatattatgtgcATCTCAACACGGGAATGTTATCCGCCATATGTTTTCAtggaagttgttcacaatacttatccatccacagagtttgtaatgtagtcaaatgtttacaaatacaagtgcagctgTTTAAAtctaatttctggttaatgatgtcagactTTATTGCCATTTTGAAATACATATGTGATTTATCTTTTTCAGAAACATTctgtaacgtccttgcctgtgtgaacagtgcttttatGAATTAACTTGTAAAGTCGTTACGGaaatttccagatatttactggtatcactgtgtgaaagggcctaatgtctgcttgtctcctccaaaaacagcttctgcagataTCACTTAATGTTCTGAACGTTTATATTTTTGCGGCAGATCGATGaaagtcgctttctgtatgtccaaaaccaaaagattcattcaaaagttcacacttagctgataatcaataaagcgtaattggcttgctgtcccaggagagccctgagctcataatatcctcgagcccagggcttcctTCCATTAgaaaggcgagaggggagttcgagctctGGTAGGTCCCCTGCTTGTCGCCCTGTGAGAAGTGTGAACTAAGGTTGtcttgggtgataatttggtttagtcgattagctatggtttatgtttttggacagtgggaggaaaccggggaacccaaggtaaacccacgcgaacacagggagaacttggaaactccgcacagaaacgccaacctcTCCGATAGGAAGTTGGatcagtgatgttcttgctgtgaggcaacagtgctagccactgggccaccgtgtcaccctatcGGAAAAAAGCGGAGGAAGTAGGGGGAGAAGGGGggaagcttcaagacgaagataactggagtgaaaaactctggttatttataatgcttccgttaTCATCCaatagggcagattacggagctaatgaggtgccagccgtgtttatcataagcacgtgatcctctcgaaattagtttataaataaaccacatgtaaaagcagaatgaccataATAtgcggacgtctttccattttAGTGCTTTGCTTTTGTgtccgtcacctagcaacagccgttcacaacagcagctcgatgacgcaatcATACCGgcgttcagaaggaaaaaaagacagtgtgaacacaagcCAACCAAGAAAGTGGCAAGGGGGAACAAtcaaacttgggtacggtccaggcaattgaaccaagtgtgaaagcaccttaaagACAAAGCTACATTTTCAGTTGTCACATGATCCTTAAGAAATCATTCTAAAATTCTTGATTTGGCATGGAGATAttgtcaatgtaaaaaaaataagttatttctaattattttttttggaagCTATAATGTCACCGATGATTATTCTGAtgcatgattgtttttttttaagtaagttgAACAAATGTACTTAATACTTTAACATGGACCAAAGTTTGTTTAGATATATACAACAGCTTGAAACCACAGcagatgtatttttattataatgtaagaGTGCATAGATATTTATGCCGTGACCGTTTTTGTGACCTTTCTGCTGATTACAATCCAGACAAAGTGAAGCGTAGCGTTTGCTCTTAAACCGAAGGGAATGTTTAAATCATGTCACATTTTACTACCAAAGTCTTAAATCTCCTCAGAGTATGTTTCTCAGAGTTAGCATCTAAAGGTCAAAGAACAAATCCATCTTGAATACCAAGCATGCTCCCATATGTTCCAATGTGACCCTGAATCCAGAATCAGCAACACCCTTGAGTTGCCTTTGACAATTAATTATACAATCAGAATGtcctttttacataaatatacagtatatgattGTTTATTTGAAAATTGCTTGTAGTTTACCCTATCTTTCTGTATGTCAAAATGCTAATGTAAACAGTCagtaaaaatgctgtattttaagaCTAATCAGGTAAACTGTGGGCTAGCTTTAAGTAGGATCCTGCTTTGGAGTACCAATTGGCGAAAACAGGAAATGAAGGATGTCATATGGCTTGTTCCACATTGCACAGATTCATCAGAGTAATAATGCTCATACAAACGCATGGGGACCAGTGGTTGTGCTGTGATCTTTGCTTTTGTGTCTTTTTCCTTGTTATTTAAACACTTAAGCACCCAAAGTGCACTTTTAATTTAATGTTGGCTAACATGTTAATCAAGTATCTATACAGTGTGTGGTGTAACTTCGACAGTGTCCGCACTGGTTATAATCCTGCATTGCCTATGTTTTGTATGCCAAAAGAACTGCattggtgtattatttttttggaGCAATTGAAAGTACTATCAGTATTCAGTAATTTAACATACAGTGTTACGTAATAAAACATCATACTATATTTGTGCATtcttcttaattgttttttgtgcTA
>TCONS_00063956
AGCCGTATGATTTAAGCTTCACGTCAGTACAGCCGTTCAGCTTGAGCTCCGATCCAACCCTGACTTTATATCCGTGCACAACATCCACACTTCACCTCAGCACAGCGATGGCATCATCCGCACAGAGAGTATAGAGCACGTAGATCTGAAGCGTTTTAACGACGATCTTCCGAGAGACGCGCATCATGCTCAGGTGGTCCGTGTTTCCCACCGAAGAAGGAGATCATTCAGACTGCGTTCGGGAGAGAAAACAGTCGTGTGAATGTTCAGAATATTAATCAGACCCGTTTTCTAATCATGGAGGAGAGTAATAATACCTGTGAGTCAGTTCCTGATTTGAAAGATCTGGAGTTGAAAGTGGGTAGAAAGACCCCAGAAGGGCTCCTGAAGTGGATGAGAGAAGAGCACAAGATGATCTCTCATCATCAGACTGACAATAATGAGACTGAGAAGAAAGGTCTCGATGGGAAGATACGAAAACTTAAAATGGAGATGGCTCATCTACGAGCAGCAGATGTCAAAATCTTGAACCAGTTGCTAGCACTGCATGAGGGTATCGAGGCAGTGAAATGGCTTCTAGAAGAACGTGGCGCTCTCACCAGCCGCTGCAGCAGCCTGACCAGCAGCCAGTACAGCTTAGGGGAGGGTCCTGACACGTCCTGGAGAGGCAGCTGGAGCAGTCTGCAAGATCCCCATGACAAGCTGGACAACATTTCCATCGGCAGCTATCTGGACACATTAGCTGATGAACTGGATGAGTACTGCCCTTCCAGTGGGACTGAGTCAATACTCTGTGCCACTCCTATGGGGACTGGAGGAGGGGTCAGCAGTTCCACTGGATCTGGAAGCAGACCTCCTCAAGTCAAAACAGATGCCACTAAAGAAGAAGCTCAGGTTTGGAATAAAGCACCGTCTGAGACAGCGAGAGTTAACAAGACCAATGGAACCCTGGACAAAACAGCGACTCAATTGGTCAGCTCAGATTCGCCCAGAGCTTGTCTCGCTGAGAAGCTTGGGAAGAATCTGAGCCCTAAAGTCAAACCATACAAAAATGGCAAGGTTGAGCTGGAGAGCTGTAAAAAGAATGGCAAAGTTCAACTGGAGTACGATGCACACTGGCGTTGGGTTCAGTCGCAGGATGATGTAACGTTTTTGTGATAGCATACACGATTGCTCAGCCAAAGCTGGGAGATTGGGGTTTAAACACTGAGGTTTTGTTTGCCGACTTTCATCTTTGATTAATGTGAGGCCAGATTCTCAGGTCTCCTttaaataacagaggttaaaCGTTAACAACAGGAAAGAATAAGAAATGGAAAGAAGCTTAAACGTGTGAATTCAGAGTTTAAAAAGCCTGAATTAGTGGTTGTTAGATGTGTATGGACGCATGTTTTCTGTgtgcatttcagtttttttttttttggcattgatTGATTCAGCAAAGCTATTTATTAATTAGTCATTAATCCTTTATTGCATATTCAgtgcaaacattttatttgaattacaATGATGTAATTGCAAATTGGTGTGCTTGCAAATCAACTTTTTGTAGTATATTTACATTGGCATACAGAACTGCGGTAcagaccaattaaaaaaaaaaa

Function

symbol description
lurap1 Acts upstream of or within several processes, including cell-matrix adhesion; muscle tissue morphogenesis; and regulation of convergent extension involved in gastrulation. Is expressed in several structures, including blastomere; neural tube; notochord; trunk; and yolk. Orthologous to human LURAP1 (leucine rich adaptor protein 1).

GO:

id name namespace
GO:0060415 muscle tissue morphogenesis biological_process
GO:0007030 Golgi organization biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:1904104 negative regulation of convergent extension involved in gastrulation biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-35 Acts upstream of or within several processes, including cell-matrix adhesion; muscle tissue morphogenesis; and regulation of convergent extension involved in gastrulation. Is expressed in several structures, including blastomere; neural tube; notochord; trunk; and yolk. Orthologous to human LURAP1 (leucine rich adaptor protein 1).

Ensembl:

ensembl_id ENSDARG00000115301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063955 False 5987 mRNA 0.40 2 30625945 30658848
TCONS_00063956 True 1607 mRNA 0.45 3 30629993 30658755

Neighbor

gene id symbol gene type direction distance location
XLOC_032921 zgc:153311 coding downstream 140936 30484005 ~ 30485009 (-)
XLOC_032920 NA coding downstream 166930 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 coding downstream 403975 30221834 ~ 30221970 (-)
XLOC_032917 lrrc7 coding downstream 415567 30124197 ~ 30210378 (-)
XLOC_032918 FP236850.2 coding downstream 422908 30202921 ~ 30203037 (-)
XLOC_032923 ttc4 coding upstream 18147 30676995 ~ 30683637 (-)
XLOC_032924 pars2 coding upstream 25848 30684696 ~ 30689126 (-)
XLOC_032925 sgip1a coding upstream 51078 30709926 ~ 30839763 (-)
XLOC_032926 pde4ba coding upstream 192697 30851545 ~ 30954268 (-)
XLOC_032927 CR847887.1 coding upstream 410682 31069530 ~ 31147255 (-)
XLOC_032916 NA non-coding downstream 540343 30083946 ~ 30085602 (-)
XLOC_032915 NA non-coding downstream 765093 29851193 ~ 29860852 (-)
XLOC_032933 NA non-coding upstream 1086443 31745291 ~ 31749784 (-)
XLOC_032940 NA non-coding upstream 1536960 32195808 ~ 32196825 (-)
XLOC_032944 NA non-coding upstream 1756228 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 1915148 32573996 ~ 32592792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_04362537_04371224 LURAP1 coding CI01000340 null 4362375 ~ 4371224 (-)