XLOC_032923 (ttc4)


Basic Information

Item Value
gene id XLOC_032923
gene name ttc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 30676995 ~ 30683637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063957
AGATGTTTGCTGAGAGCATGTGGATCTTTGCTACGGTTTGTACAGTTTTATCCTATTTTACGTTTAATGTTTAGTTCCTCTACAATTGCGATCTGAACGCGGTGACGTAGTGAGATACGTCAAGAACTACCTGGGATACACTTCAGAATAAATTTAAGGAGATAACATGGCTGCACCAACGCAAGGGGAAGACAGCGACGATGGCATGGACGAATTTATGGAGAAGTTTAAAACACAGAAATACCATAATGCGTTCAACGAAAGCAACTGGGAGGAGGAGTTTGAAAAAGTTCCCATGTTCATGAAGACAGCGCCAGAAAACATTGACCCAGAGAAACACCCTGATCTCGCCTGTATCCAGCATATTATCCACGATGATGACAGAACTCCTGAAGAGAAAGCCAGAAGTCTCAAGGATGAGGGGAATGAATACTTCAAGGAGAAGAAGTACAAGAAAGCTGTTGTTTCCTACACAGAAGGATTGAAAACGAGCTGTGTGAATCCTGAACTCAATGCCGTTTTGTACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCGGCTTTAAATGATGCCACAGCTGCAAAAAAATTGAAGCCAGACCACAATAAAGCCATTATAAGAGGAGCACAGTGCTTGCTGGAGCTGCGTAATTACGCTGGAGCGTTACAGTGGTGTGATGAAGGTCTAAAGTTGTTTCCCACTGACAAGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGagAGAAGCTGACAGAGATGCCAGGAAGGCGAAGGTTAAAGCGAAGAAGCAGCAGAATGAGAAAGAAGCATTGTTAGCTGCCATTAAGGAGCGAGGAATTAAACTCCTGAAGACAGAAAAGCCTCCTCACAGGGCTTCAGACAGCGAGGATGAGGATAGAGATGAAGACACCTCTAGGGCTCTGGCTGATCTTCAGCTTGATGGAATCAGCTCACAGGAGGCAACAGGCGCTCGGGTTTATATGGATGAACAGGGTGTCCTTCACTGGCCAGTGATGTTCCTTTATCCTGAGCACAGCCAGACAGACTTCATTTCTGCTTTCTCAGAGAACGCCAGCTTCATAGATCATTTGGCGGTGATGTTTGGTGAAGAGCTTCCTCCCTGGGATATAGACCAAAAATATCAGCCACAGAATCTGCAGatgttctTTGAAGATCCTGAAAAAGGAAACCTTTATCAAGTTGATCTTCAAGAGTCACTTCTTAGAGTTCTACAGCACCAAAGGTGCTCGGTGAAGGCAGGAACTCCTAGTTTCATTGTGCTGGTATCAGAATCTCCGTTTTCTAGGCAGTTCTTATCAGGAAAAAAGGTGCAGAGATTAAAATTATTGAAATGATCTGGAATGACCTTAAAAGTCTTTAAATGCCTTTGTCATTATTCAACCTACTACTATAAAAAAACATTGCTGCTCTCACACCTCTTAAGAAAACTCCCCCTTGAACTTTGAGGTGCAGTTCTTCTCCTCCATATCAGTGATTTATTCTTATTAAAAATGTTCCACCAATTTTCTATTACTGTAATGTCAACCGAATCACTGATTGAGATCAGCTAAACTTTGCAGTACTTTTGATGGATGACAATgcatggcagttttttttttttcaacatgttaGTATTTTACTGAAGTATTTACCATTTTTACTATGGCACTCTGGATTTACAGCAATAGCCCACCACcgaaaaaaaagacatttctgtcatcattaatcCTACAAACTTTGCTTTGTAGAacaaaaagaaagattttttaaGATTGTTAACTTTTTGTTAGTTCTACAGAAGGCTTACAGTTTTGAAATATTGTAAAGGTAAACTATCATAAAATTTCCACCAAATTATCATGTTTTTGGgtggagattttttttgttgctacATTTCTTCTTATGGTCACTTGTTAGACCTAATTATGTTAAAAGCaacacatttttacactgtgataTAGTTTTCATGCAATTTCAATAAACCATTTGCACCCGATCCAAAAA

Function

symbol description
ttc4 Predicted to enable Hsp90 protein binding activity and actin binding activity. Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC4 (tetratricopeptide repeat domain 4).

GO:

id name namespace
GO:0032474 otolith morphogenesis biological_process
GO:0060271 cilium assembly biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005575 cellular_component cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040426-1021 Predicted to enable Hsp90 protein binding activity and actin binding activity. Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC4 (tetratricopeptide repeat domain 4).

Ensembl:

ensembl_id ENSDARG00000044405

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063957 True 2024 mRNA 0.40 10 30676995 30683637

Neighbor

gene id symbol gene type direction distance location
XLOC_032922 lurap1 coding downstream 18147 30625945 ~ 30658848 (-)
XLOC_032921 zgc:153311 coding downstream 191986 30484005 ~ 30485009 (-)
XLOC_032920 NA coding downstream 217980 30452287 ~ 30459015 (-)
XLOC_032919 FP236850.1 coding downstream 455025 30221834 ~ 30221970 (-)
XLOC_032917 lrrc7 coding downstream 466617 30124197 ~ 30210378 (-)
XLOC_032924 pars2 coding upstream 1059 30684696 ~ 30689126 (-)
XLOC_032925 sgip1a coding upstream 26289 30709926 ~ 30839763 (-)
XLOC_032926 pde4ba coding upstream 167908 30851545 ~ 30954268 (-)
XLOC_032927 CR847887.1 coding upstream 385893 31069530 ~ 31147255 (-)
XLOC_032928 lepr coding upstream 500421 31184058 ~ 31233696 (-)
XLOC_032918 FP236850.2 non-coding downstream 473958 30202921 ~ 30203037 (-)
XLOC_032916 NA non-coding downstream 591393 30083946 ~ 30085602 (-)
XLOC_032915 NA non-coding downstream 816143 29851193 ~ 29860852 (-)
XLOC_032933 NA non-coding upstream 1061654 31745291 ~ 31749784 (-)
XLOC_032940 NA non-coding upstream 1512171 32195808 ~ 32196825 (-)
XLOC_032944 NA non-coding upstream 1731439 32415076 ~ 32416753 (-)
XLOC_032945 LO017955.2 non-coding upstream 1890359 32573996 ~ 32592792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_04381260_04383972 TTC4 coding CI01000340 null 4381084 ~ 4383972 (-)